Ss1.1-Ova1-OVRM10091E03.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAGGCCCAGCGCCGGGAAGGGGTTTGCAGCTGCTCCGTCATCGTGCGGCCCGACGCGAGC CCGCGCTCGTGTGCAGGCCCGGCTCGGTTCCTGGTCTCCGGTGCGAGGATTCACCCGAGG CCCCGGCCTCGGTCCCCGGACTAGGCCGCGACCCCGGGCGCCATGAAGCAGGAGGGCTCG GCGCGGCGCCGTGGCACGGACAAGGCAAAGCCACCGCCCGGCGGAGCGGAGCAGGAACCA CCGCCGCCCCCAGCCCCTCAAGATGTGGAGATGAAAGAAGAGGCAGCGGCCGGTGGCGCA TCAACCGGGGAGACCGATGGCAAGGCGGCAGCGGCGGCGGCTGAGCACTCCCAGCGAGAG CTGGACACCGTCACCTTGGAGGACATCAAGGAGCACGTGAAACAGCTGGAGAAGGCAGTG TCGGGCAAGGAGCCTCGGTTCGTGCTGCGGGCCCTGCGGATGCTGCCTTCCACGTCGCGC CGCCTCAACCACTATGTTCTGTACAAGGCCGTGCATGGCTTCTTCACCTCAAACAGTGCC ACTCGGGACTTCTTGCTCCCCTTCCTGGAAGAGCCCATGGACACAGAAGCCGATTTACAG TTCCGGCCCCGAACAGGAAAAGCTGCGTCAGCTCCCCTCCTGCCTGAAGTGGAAGCCTAT CTCCAGCTCCTCGTGGTCATCTTCCTGATGAACAGCAAGCGCTACAAAGAGGCACAGAAG ATCTCGGATGACCTGATGCAGAAGATCAGCACTCAGAACCGCCGGGCACTGGACCTCGTG GCTGCGAAGTGTTACTATTATCACGCCCGGGTCTATGAGTTCCTGGACAAGCTGGATGTG GTGCGCAGCTTCTTGCATGCACGGCTCCGGACAGCCACCCTGCGGCACGACGCGGATGGG CAGGCCACGTTGCTGAACCTCCTGCTGCGGAACTACTTGCACTACAACTTGTACGACCAG GCCGAGAAGCTGGTGTCCAAGTCCGTGTTCCCCGAGCAGGCCAACAACAACGAGTGGGCA AGGTACCTCTACTACACAGGGCGGATCAAAGCCATCCAGCTGGAGTACTCGGAGGCCCGG AGAACAATGACCAACGCCCTTCGCAAGGCCCCTCAGCACACAGCTGTCGGCTTCAAACAG ACGGTGCACAAGCTGCTGATTGTGGTGGAGCTGTTGCTGGGGGAGATCCCGGACCGGCTG CAGTTCCGACAACCATCCCTCAAGCGCTCGCTCATGCCCTACTTCCTCCTGACCCAGGCT GTCCGGACGGGAAACCTGGCCAAGTTCAACCAGGTCCTGGATCAGTTTGGGGAGAAGTTT CAAGCAGATGGGACCTACACCCTCATCATCCGACTGCGGCACAACGTCATCAAGACAGGT GTGCGCATGATCAGCCTCTCCTATTCCCGAATCTCCCTGGCGGACATCGCCCAGAAGCTG CAGCTGGATAGCCCAGAGGATGCCGAGTTCATTGTTGCCAAGGCCATCCGCGATGGCGTC ATTGAGGCCAGCATCAACCATGAGAAGGGGTACGTCCAGTCCAAGGAGATGATTGACATC TATTCCACCCGAGAGCCCCAGCTGGCCTTCCACCAGCGCATCTCCTTCTGCCTGGACATT CACAACATGTCTGTCAAGGCCATGAGGTTTCCTCCCAAATCGTACAACAAGGACCTGGAG TCCGCAGAGGAACGGCGGGAGCGGGAGCAGCAAGACTTGGAGTTTGCCAAGGAGATGGCA GAGGACGACGACGACAGCTTCCCTTGAGCTGGGGGGCTGGGGAGGGGTGGGGTGAGTGGG CGCTGGCTCCTTATCTTTCCCCCTCAGGGGTCCCATGCCCGGGGAACTGGCCCCTTCCCA CACGCAGCACACAGACTGTGCCTGTGCAGGGGATAAGGGGTGCAGGGAGCAGTCACCCCC ACCTCACCCAGGGCCCCTCCCCAGCCGGTGACTTAGCACACGTGGGCAGGAGGGCGGGCG GGGGGCCTCCCCAGGGCAGGGTCCTGGCTAGCGGTGTGGGCGGCGAGCTGGGAGGGACTG GCCCCGTGCTCTCCTCCAGGGAGTAGGGGACAGGAATTGGGACACGTGTTGGGCTCTATG TTTTTTGAAGCTTCGCAATTATGATTTTTAAACAATAAAACATTCTCCAAAGCTCAAAAA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAGGCCCAGCGCCGGGAAGGGGTTTGCAGCTGCTCCGTCATCGTGCGGCCCGACGCGAGC CCGCGCTCGTGTGCAGGCCCGGCTCGGTTCCTGGTCTCCGGTGCGAGGATTCACCCGAGG CCCCGGCCTCGGTCCCCGGACTAGGCCGCGACCCCGGGCGCCATGAAGCAGGAGGGCTCG GCGCGGCGCCGTGGCACGGACAAGGCAAAGCCACCGCCCGGCGGAGCGGAGCAGGAACCA CCGCCGCCCCCAGCCCCTCAAGATGTGGAGATGAAAGAAGAGGCAGCGGCCGGTGGCGCA TCAACCGGGGAGACCGATGGCAAGGCGGCAGCGGCGGCGGCTGAGCACTCCCAGCGAGAG CTGGACACCGTCACCTTGGAGGACATCAAGGAGCACGTGAAACAGCTGGAGAAGGCAGTG TCGGGCAAGGAGCCTCGGTTCGTGCTGCGGGCCCTGCGGATGCTGCCTTCCACGTCGCGC CGCCTCAACCACTATGTTCTGTACAAGGCCGTGCATGGCTTCTTCACCTCAAACAGTGCC ACTCGGGACTTCTTGCTCCCCTTCCTGGAAGAGCCCATGGACACAGAAGCCGATTTACAG TTCCGGCCCCGAACAGGAAAAGCTGCGTCAGCTCCCCTCCTGCCTGAAGTGGAAGCCTAT CTCCAGCTCCTCGTGGTCATCTTCCTGATGAACAGCAAGCGCTACAAAGAGGCACAGAAG ATCTCGGATGACCTGATGCAGAAGATCAGCACTCAGAACCGCCGGGCACTGGACCTCGTG GCTGCGAAGTGTTACTATTATCACGCCCGGGTCTATGAGTTCCTGGACAAGCTGGATGTG GTGCGCAGCTTCTTGCATGCACGGCTCCGGACAGCCACCCTGCGGCACGACGCGGATGGG CAGGCCACGTTGCTGAACCTCCTGCTGCGGAACTACTTGCACTACAACTTGTACGACCAG GCCGAGAAGCTGGTGTCCAAGTCCGTGTTCCCCGAGCAGGCCAACAACAACGAGTGGGCA AGGTACCTCTACTACACAGGGCGGATCAAAGCCATCCAGCTGGAGTACTCGGAGGCCCGG AGAACAATGACCAACGCCCTTCGCAAGGCCCCTCAGCACACAGCTGTCGGCTTCAAACAG ACGGTGCACAAGCTGCTGATTGTGGTGGAGCTGTTGCTGGGGGAGATCCCGGACCGGCTG CAGTTCCGACAACCATCCCTCAAGCGCTCGCTCATGCCCTACTTCCTCCTGACCCAGGCT GTCCGGACGGGAAACCTGGCCAAGTTCAACCAGGTCCTGGATCAGTTTGGGGAGAAGTTT CAAGCAGATGGGACCTACACCCTCATCATCCGACTGCGGCACAACGTCATCAAGACAGGT GTGCGCATGATCAGCCTCTCCTATTCCCGAATCTCCCTGGCGGACATCGCCCAGAAGCTG CAGCTGGATAGCCCAGAGGATGCCGAGTTCATTGTTGCCAAGGCCATCCGCGATGGCGTC ATTGAGGCCAGCATCAACCATGAGAAGGGGTACGTCCAGTCCAAGGAGATGATTGACATC TATTCCACCCGAGAGCCCCAGCTGGCCTTCCACCAGCGCATCTCCTTCTGCCTGGACATT CACAACATGTCTGTCAAGGCCATGAGGTTTCCTCCCAAATCGTACAACAAGGACCTGGAG TCCGCAGAGGAACGGCGGGAGCGGGAGCAGCAAGACTTGGAGTTTGCCAAGGAGATGGCA GAGGACGACGACGACAGCTTCCCTTGAGCTGGGGGGCTGGGGAGGGGTGGGGTGAGTGGG CGCTGGCTCCTTATCTTTCCCCCTCAGGGGTCCCATGCCCGGGGAACTGGCCCCTTCCCA CACGCAGCACACAGACTGTGCCTGTGCAGGGGATAAGGGGTGCAGGGAGCAGTCACCCCC ACCTCACCCAGGGCCCCTCCCCAGCCGGTGACTTAGCACACGTGGGCAGGAGGGCGGGCG GGGGGCCTCCCCAGGGCAGGGTCCTGGCTAGCGGTGTGGGCGGCGAGCTGGGAGGGACTG GCCCCGTGCTCTCCTCCAGGGAGTAGGGGACAGGAATTGGGACACGTGTTGGGCTCTATG TTTTTTGAAGCTTCGCAATTATGATTTTTAAACAATAAAACATTCTCCAAAGCTCAAAAA AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 572-1922, + strand, RNAz p=0.98782 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 572-1922, + strand, RNAz p=0.98782 |
| Aligned organism(s): 34 entry(ies) | More info |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
| 1-382, gnl|bosTau2|chr19 (34589620-34589238) | |
| 1-382, gnl|Hg17|chr17 (35390588-35390969) | |
| 1-382, gnl|Mm7|chr11 (98791607-98791976) | |
| 572-721, gnl|bosTau2|chr19 (34585816-34585667) | |
| 572-721, gnl|canFam2|chr9 (25875796-25875642) | |
| 572-721, gnl|danRer3|chrNA (4553473-4553626) | |
| 572-721, gnl|dasNov1|scaffold_3272 (56992-56838) | |
| 572-721, gnl|echTel1|scaffold_25128 (759-884) | |
| 572-721, gnl|fr1|chrUn (320123062-320122904) | |
| 572-721, gnl|galGal2|chrUn (131889659-131889812) | |
| 572-721, gnl|hg17|chr17 (35396340-35396494) | |
| 572-721, gnl|Hg17|chr17 (35396352-35396501) | |
| 572-721, gnl|loxAfr1|scaffold_29106 (4845-4999) | |
| 572-721, gnl|mm7|chr11 (98794959-98795113) | |
| 572-721, gnl|Mm7|chr11 (98794971-98795120) | |
| 572-721, gnl|monDom2|scaffold_18 (49192314-49192468) | |
| 572-721, gnl|oryCun1|scaffold_210513 (64772-64618) | |
| 572-721, gnl|panTro1|chr19 (38634750-38634904) | |
| 572-721, gnl|rheMac2|chr16 (50086389-50086543) | |
| 572-721, gnl|rn3|chr10 (87474131-87474285) | |
| 572-721, gnl|tetNig1|chrUn_random (46228544-46228703) | |
| 572-721, gnl|xenTro1|scaffold_1259 (212524-212677) | |
| 845-1040, gnl|bosTau2|chr19 (34583419-34583224) | |
| 845-1040, gnl|Hg17|chr17 (35399514-35399709) | |
| 845-1040, gnl|Mm7|chr11 (98799498-98799693) | |
| 1235-1383, gnl|bosTau2|chr19 (34579380-34579231) | |
| 1235-1383, gnl|Hg17|chr17 (35404930-35405079) | |
| 1235-1383, gnl|Mm7|chr11 (98802595-98802742) | |
| 1481-1639, gnl|bosTau2|chr19 (34578561-34578403) | |
| 1481-1639, gnl|Hg17|chr17 (35405960-35406118) | |
| 1481-1639, gnl|Mm7|chr11 (98803175-98803333) | |
| 1688-2155, gnl|bosTau2|chr19 (34577301-34576847) | |
| 1688-2155, gnl|Hg17|chr17 (35407281-35407739) | |
| 1688-2155, gnl|Mm7|chr11 (98804560-98805021) |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-382, gnl|bosTau2|chr19 (34589620-34589238) | |
| 1-382, gnl|Hg17|chr17 (35390588-35390969) | |
| 1-382, gnl|Mm7|chr11 (98791607-98791976) | |
| 572-721, gnl|bosTau2|chr19 (34585816-34585667) | |
| 572-721, gnl|canFam2|chr9 (25875796-25875642) | |
| 572-721, gnl|danRer3|chrNA (4553473-4553626) | |
| 572-721, gnl|dasNov1|scaffold_3272 (56992-56838) | |
| 572-721, gnl|echTel1|scaffold_25128 (759-884) | |
| 572-721, gnl|fr1|chrUn (320123062-320122904) | |
| 572-721, gnl|galGal2|chrUn (131889659-131889812) | |
| 572-721, gnl|hg17|chr17 (35396340-35396494) | |
| 572-721, gnl|Hg17|chr17 (35396352-35396501) | |
| 572-721, gnl|loxAfr1|scaffold_29106 (4845-4999) | |
| 572-721, gnl|mm7|chr11 (98794959-98795113) | |
| 572-721, gnl|Mm7|chr11 (98794971-98795120) | |
| 572-721, gnl|monDom2|scaffold_18 (49192314-49192468) | |
| 572-721, gnl|oryCun1|scaffold_210513 (64772-64618) | |
| 572-721, gnl|panTro1|chr19 (38634750-38634904) | |
| 572-721, gnl|rheMac2|chr16 (50086389-50086543) | |
| 572-721, gnl|rn3|chr10 (87474131-87474285) | |
| 572-721, gnl|tetNig1|chrUn_random (46228544-46228703) | |
| 572-721, gnl|xenTro1|scaffold_1259 (212524-212677) | |
| 845-1040, gnl|bosTau2|chr19 (34583419-34583224) | |
| 845-1040, gnl|Hg17|chr17 (35399514-35399709) | |
| 845-1040, gnl|Mm7|chr11 (98799498-98799693) | |
| 1235-1383, gnl|bosTau2|chr19 (34579380-34579231) | |
| 1235-1383, gnl|Hg17|chr17 (35404930-35405079) | |
| 1235-1383, gnl|Mm7|chr11 (98802595-98802742) | |
| 1481-1639, gnl|bosTau2|chr19 (34578561-34578403) | |
| 1481-1639, gnl|Hg17|chr17 (35405960-35406118) | |
| 1481-1639, gnl|Mm7|chr11 (98803175-98803333) | |
| 1688-2155, gnl|bosTau2|chr19 (34577301-34576847) | |
| 1688-2155, gnl|Hg17|chr17 (35407281-35407739) | |
| 1688-2155, gnl|Mm7|chr11 (98804560-98805021) |
| Expressed library(ies): 14 entry(ies) | More info |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
| ebs (0.473205) | |
| eep (0.367692) | |
| clu (0.358938) | |
| jca (0.22792) | |
| cty (0.20816) | |
| eje (0.197668) | |
| nep (0.183925) | |
| fty (0.17584) | |
| ton (0.1755) | |
| nje (0.16592) | |
| cag (0.151194) | |
| nca (0.136874) | |
| ese (0.126502) | |
| jej (0.0989218) |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ebs (0.473205) | |
| eep (0.367692) | |
| clu (0.358938) | |
| jca (0.22792) | |
| cty (0.20816) | |
| eje (0.197668) | |
| nep (0.183925) | |
| fty (0.17584) | |
| ton (0.1755) | |
| nje (0.16592) | |
| cag (0.151194) | |
| nca (0.136874) | |
| ese (0.126502) | |
| jej (0.0989218) |