Ss1.1-Ova1-OVRM10092B07.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATATACAGGCGAGCGCGCCCCCGGCCCGCGGACCGCGCGCACAGCCCACGCCGCGGGTAA GCGAGACCTCGGCCCGCTTCCATGACTTCCAGTAAGATCGAGATGCCCGGCGAGGTGAAG GCCGACCCCGCCGCCCTCATGGCGTCCCTGCACCTTCTGCCGTCGCCCACGCCCAACCTC GAGATCAAGTACACCAAGATTTTTATTAACAATGAGTGGCAGAACTCAGAGAGTGGAAGA GTGATCCCTGTCTATAATCCAGCCACAGGAGAGCAGGTGTGTGAAGTTCAAGAAGCAGAC AAGGCAGATATAGACAAAGCAGTGCAGGCAGCCCGCCTGGCTTTCTCTCTTGGTTCAGTG TGGAGGAGGATGGACGCTTCTGAAAGAGGACATCTGCTGGATAAGCTTGCAGACTTGGTG GAACGAGACAGGGCCATCCTTGCAACCATGGAATCCCTAAATGGTGGCAAACCGTTCCTG CAAGCTTTTTACGTGGATTTGCAGGGGGTCATCAAAACCCTTCGGTATTATGCAGGCTGG GCTGATAAAATTCATGGGATGACCATTCCTGTAGATGGAGATTATTTTACCTTCACAAGA CACGAACCCATTGGAGTGTGTGGACAGATCATCCCGTGGAACTTCCCCCTGCTGATGTTT GCCTGGAAAATTGCTCCAGCTCTGTGCTGTGGCAATACAGTAGTTATTAAGCCAGCAGAA CAAACACCACTCAGCGCGCTCTACATGGGAGCTCTCATCAAGGAGGCTGGCTTTCCACCA GGAGTCATCAATATTTTGCCAGGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATATACAGGCGAGCGCGCCCCCGGCCCGCGGACCGCGCGCACAGCCCACGCCGCGGGTAA GCGAGACCTCGGCCCGCTTCCATGACTTCCAGTAAGATCGAGATGCCCGGCGAGGTGAAG GCCGACCCCGCCGCCCTCATGGCGTCCCTGCACCTTCTGCCGTCGCCCACGCCCAACCTC GAGATCAAGTACACCAAGATTTTTATTAACAATGAGTGGCAGAACTCAGAGAGTGGAAGA GTGATCCCTGTCTATAATCCAGCCACAGGAGAGCAGGTGTGTGAAGTTCAAGAAGCAGAC AAGGCAGATATAGACAAAGCAGTGCAGGCAGCCCGCCTGGCTTTCTCTCTTGGTTCAGTG TGGAGGAGGATGGACGCTTCTGAAAGAGGACATCTGCTGGATAAGCTTGCAGACTTGGTG GAACGAGACAGGGCCATCCTTGCAACCATGGAATCCCTAAATGGTGGCAAACCGTTCCTG CAAGCTTTTTACGTGGATTTGCAGGGGGTCATCAAAACCCTTCGGTATTATGCAGGCTGG GCTGATAAAATTCATGGGATGACCATTCCTGTAGATGGAGATTATTTTACCTTCACAAGA CACGAACCCATTGGAGTGTGTGGACAGATCATCCCGTGGAACTTCCCCCTGCTGATGTTT GCCTGGAAAATTGCTCCAGCTCTGTGCTGTGGCAATACAGTAGTTATTAAGCCAGCAGAA CAAACACCACTCAGCGCGCTCTACATGGGAGCTCTCATCAAGGAGGCTGGCTTTCCACCA GGAGTCATCAATATTTTGCCAGGA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 636-754, - strand, RNAz p=0.700688 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 636-754, - strand, RNAz p=0.700688 |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 302-443, gnl|bosTau2|chr10 (34287762-34287903) | |
| 302-443, gnl|canFam2|chr30 (26121599-26121769) | |
| 302-443, gnl|danRer3|chrUn (149724942-149724781) | |
| 302-443, gnl|dasNov1|scaffold_4676 (41377-41207) | |
| 302-443, gnl|echTel1|scaffold_316461 (72986-72825) | |
| 302-443, gnl|fr1|chrUn (227062450-227062613) | |
| 302-443, gnl|galGal2|chr10 (7903711-7903543) | |
| 302-443, gnl|hg17|chr15 (56093342-56093512) | |
| 302-443, gnl|Hg17|chr15 (56093490-56093349) | |
| 302-443, gnl|loxAfr1|scaffold_4435 (11238-11406) | |
| 302-443, gnl|mm7|chr9 (71287427-71287257) | |
| 302-443, gnl|Mm7|chr9 (71287277-71287418) | |
| 302-443, gnl|monDom2|scaffold_12 (35994536-35994705) | |
| 302-443, gnl|oryCun1|scaffold_201335 (9251-9081) | |
| 302-443, gnl|panTro1|chr16 (56453603-56453773) | |
| 302-443, gnl|rheMac2|chr7 (36352351-36352505) | |
| 302-443, gnl|rn3|chr8 (75747415-75747245) | |
| 302-443, gnl|tetNig1|chr5 (5464385-5464545) | |
| 302-443, gnl|xenTro1|scaffold_297 (1139052-1138889) | |
| 445-574, gnl|bosTau2|chr10 (34291015-34291144) | |
| 445-574, gnl|Hg17|chr15 (56090268-56090139) | |
| 445-574, gnl|Mm7|chr9 (71289397-71289526) | |
| 636-766, gnl|bosTau2|chr10 (34309090-34309220) | |
| 636-766, gnl|Hg17|chr15 (56072564-56072434) | |
| 636-766, gnl|Mm7|chr9 (71298149-71298279) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 302-443, gnl|bosTau2|chr10 (34287762-34287903) | |
| 302-443, gnl|canFam2|chr30 (26121599-26121769) | |
| 302-443, gnl|danRer3|chrUn (149724942-149724781) | |
| 302-443, gnl|dasNov1|scaffold_4676 (41377-41207) | |
| 302-443, gnl|echTel1|scaffold_316461 (72986-72825) | |
| 302-443, gnl|fr1|chrUn (227062450-227062613) | |
| 302-443, gnl|galGal2|chr10 (7903711-7903543) | |
| 302-443, gnl|hg17|chr15 (56093342-56093512) | |
| 302-443, gnl|Hg17|chr15 (56093490-56093349) | |
| 302-443, gnl|loxAfr1|scaffold_4435 (11238-11406) | |
| 302-443, gnl|mm7|chr9 (71287427-71287257) | |
| 302-443, gnl|Mm7|chr9 (71287277-71287418) | |
| 302-443, gnl|monDom2|scaffold_12 (35994536-35994705) | |
| 302-443, gnl|oryCun1|scaffold_201335 (9251-9081) | |
| 302-443, gnl|panTro1|chr16 (56453603-56453773) | |
| 302-443, gnl|rheMac2|chr7 (36352351-36352505) | |
| 302-443, gnl|rn3|chr8 (75747415-75747245) | |
| 302-443, gnl|tetNig1|chr5 (5464385-5464545) | |
| 302-443, gnl|xenTro1|scaffold_297 (1139052-1138889) | |
| 445-574, gnl|bosTau2|chr10 (34291015-34291144) | |
| 445-574, gnl|Hg17|chr15 (56090268-56090139) | |
| 445-574, gnl|Mm7|chr9 (71289397-71289526) | |
| 636-766, gnl|bosTau2|chr10 (34309090-34309220) | |
| 636-766, gnl|Hg17|chr15 (56072564-56072434) | |
| 636-766, gnl|Mm7|chr9 (71298149-71298279) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eru (0.120048) |