Non-Coding RNA Search

Ss1.1-Ova1-OVRM10093B01.5

Sequence:


               
               CCGAGCTCTGCCGCGTCTCCCGAGTGCGCTGAGGCGCCGCTTGGTGGGGTTTCGCGGCGT
GCGCCCTGGACCCAGCTGCTACCATGAGCCGACATAGCCGGCTCCAGAGGCAAGTTCTGA
GCCTGTACCGCGAACTGCTGCGCGCCGGGCGTGGGAAGCCAGGGGCCGAGGCGCGCGTGC
GGGCCGAGTTCCGGCAGCACGCCTGCCTGCCACGCTCTGACGTACTGCGTATCGAGTACC
TTTACCGCCGCGGGCGGCGGCAGCTCCAGCTGCTGCGCTCAGGCCACGCCACGGCCATGG
GCGCCTTCGTGCGTACGCGTGACCCGACCGAGGAGTCCTGCGGCGCCGAGGCCCCAGGGA
CCCCGCCTGGTGAAGGTCCGAAGAGACCGCTGGACAGCATGGGGGCACCGGGTACCCCGT
CCAGTGAACGGTGACCGGCTAAAGGGCTCGCTCGATGGCTCAGGGGAACTGGGGGGCCCG
CCTGACTGCCTGGGAGGCCCAGGAAACACGCTTGATGGAAAGTGAAAGGGCTTGAGAGAC
TGGATCGACAAATTGGGGGAGTTGCAGAGCCCTCCTGGCAACGGGTCAGATGGCGAGAGA
TGCCTGACCTTGCCTGCTCACGGCTCGGGGCGGCCTGGGTCGCCCGCTGACTGGACTGTC
AGGCTGAGAGCTATTTATCCCAAGGCCTGGGGAGCCGGGACTCCCCGCTGTTGGACGGAA
AAAGACCGAGACGCCTTCTCTTGACGCCTGAGAACGTATCACTCCTGGTTCCTCAAGGAG
ACTCTCCTGGATTTAACTCTTAGAAGAGCAGACTTTTTGCTGAGGAGTTTGGGAAGATGT
CCTGGTGGACGGTGAAAAGCCTGGAATCCTCCTTAAGAAAAATCTTTCCCCCGTTGTTAC
AGACTGGGACCAGTGAGGAAGGGGCTAGGGGTCTTTCACCCCAGTTAATCAACTAAAGAC
CCCCGTCGAGACCTCTACGTCATGGTTCTGAGGGGACCCCCAACTCTTGCTCCTTTCCTT
GCTCAGGGCCACTGGACAAAGGGAATAAAATGGGGGATGTGCTTACTTCCCTGTTGATGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCGAGCTCTGCCGCGTCTCCCGAGTGCGCTGAGGCGCCGCTTGGTGGGGTTTCGCGGCGT
GCGCCCTGGACCCAGCTGCTACCATGAGCCGACATAGCCGGCTCCAGAGGCAAGTTCTGA
GCCTGTACCGCGAACTGCTGCGCGCCGGGCGTGGGAAGCCAGGGGCCGAGGCGCGCGTGC
GGGCCGAGTTCCGGCAGCACGCCTGCCTGCCACGCTCTGACGTACTGCGTATCGAGTACC
TTTACCGCCGCGGGCGGCGGCAGCTCCAGCTGCTGCGCTCAGGCCACGCCACGGCCATGG
GCGCCTTCGTGCGTACGCGTGACCCGACCGAGGAGTCCTGCGGCGCCGAGGCCCCAGGGA
CCCCGCCTGGTGAAGGTCCGAAGAGACCGCTGGACAGCATGGGGGCACCGGGTACCCCGT
CCAGTGAACGGTGACCGGCTAAAGGGCTCGCTCGATGGCTCAGGGGAACTGGGGGGCCCG
CCTGACTGCCTGGGAGGCCCAGGAAACACGCTTGATGGAAAGTGAAAGGGCTTGAGAGAC
TGGATCGACAAATTGGGGGAGTTGCAGAGCCCTCCTGGCAACGGGTCAGATGGCGAGAGA
TGCCTGACCTTGCCTGCTCACGGCTCGGGGCGGCCTGGGTCGCCCGCTGACTGGACTGTC
AGGCTGAGAGCTATTTATCCCAAGGCCTGGGGAGCCGGGACTCCCCGCTGTTGGACGGAA
AAAGACCGAGACGCCTTCTCTTGACGCCTGAGAACGTATCACTCCTGGTTCCTCAAGGAG
ACTCTCCTGGATTTAACTCTTAGAAGAGCAGACTTTTTGCTGAGGAGTTTGGGAAGATGT
CCTGGTGGACGGTGAAAAGCCTGGAATCCTCCTTAAGAAAAATCTTTCCCCCGTTGTTAC
AGACTGGGACCAGTGAGGAAGGGGCTAGGGGTCTTTCACCCCAGTTAATCAACTAAAGAC
CCCCGTCGAGACCTCTACGTCATGGTTCTGAGGGGACCCCCAACTCTTGCTCCTTTCCTT
GCTCAGGGCCACTGGACAAAGGGAATAAAATGGGGGATGTGCTTACTTCCCTGTTGATGA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61831352|ref|XP_585951.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61831352|ref|XP_585951.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               757-1010, - strand, RNAz p=0.999979

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               757-1010, - strand, RNAz p=0.999979

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               53-475, gnl|bosTau2|chr18 (41786860-41787287)
               

               
               53-475, gnl|Hg17|chr19 (41177971-41178431)
               

               
               53-475, gnl|Mm7|chr7 (27263520-27263071)
               


               
               493-1079, gnl|bosTau2|chr18 (41787283-41787869)
               

               
               493-1079, gnl|canFam2|chr1 (119597712-119597017)
               

               
               493-1079, gnl|dasNov1|scaffold_96496 (40812-40075)
               

               
               493-1079, gnl|echTel1|scaffold_321974 (97443-98091)
               

               
               493-1079, gnl|hg17|chr19 (41178376-41179114)
               

               
               493-1079, gnl|Hg17|chr19 (41178427-41179068)
               

               
               493-1079, gnl|loxAfr1|scaffold_40442 (13596-14276)
               

               
               493-1079, gnl|mm7|chr7 (27263112-27262544)
               

               
               493-1079, gnl|oryCun1|scaffold_156135 (7577-6872)
               

               
               493-1079, gnl|panTro1|chr20 (38022159-38022897)
               

               
               493-1079, gnl|rheMac2|chr19 (42485086-42485811)
               

               
               493-1079, gnl|rn3|chr1 (85346466-85345891)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               53-475, gnl|bosTau2|chr18 (41786860-41787287)
               

               
               53-475, gnl|Hg17|chr19 (41177971-41178431)
               

               
               53-475, gnl|Mm7|chr7 (27263520-27263071)
               


               
               493-1079, gnl|bosTau2|chr18 (41787283-41787869)
               

               
               493-1079, gnl|canFam2|chr1 (119597712-119597017)
               

               
               493-1079, gnl|dasNov1|scaffold_96496 (40812-40075)
               

               
               493-1079, gnl|echTel1|scaffold_321974 (97443-98091)
               

               
               493-1079, gnl|hg17|chr19 (41178376-41179114)
               

               
               493-1079, gnl|Hg17|chr19 (41178427-41179068)
               

               
               493-1079, gnl|loxAfr1|scaffold_40442 (13596-14276)
               

               
               493-1079, gnl|mm7|chr7 (27263112-27262544)
               

               
               493-1079, gnl|oryCun1|scaffold_156135 (7577-6872)
               

               
               493-1079, gnl|panTro1|chr20 (38022159-38022897)
               

               
               493-1079, gnl|rheMac2|chr19 (42485086-42485811)
               

               
               493-1079, gnl|rn3|chr1 (85346466-85345891)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               ece (0.229305)
               

               
               fcc (0.197785)
               

               
               fbs (0.175346)
               

               
               nco (0.161734)
               

               
               cli (0.152812)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               cly (0.120642)
               

               
               cty (0.10408)
               

               
               eje (0.0988338)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)
               

               
               fcc (0.197785)
               

               
               fbs (0.175346)
               

               
               nco (0.161734)
               

               
               cli (0.152812)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               cly (0.120642)
               

               
               cty (0.10408)
               

               
               eje (0.0988338)

	53-475, gnl\|bosTau2\|chr18 (41786860-41787287)
	53-475, gnl\|Hg17\|chr19 (41177971-41178431)
	53-475, gnl\|Mm7\|chr7 (27263520-27263071)

	493-1079, gnl\|bosTau2\|chr18 (41787283-41787869)
	493-1079, gnl\|canFam2\|chr1 (119597712-119597017)
	493-1079, gnl\|dasNov1\|scaffold_96496 (40812-40075)
	493-1079, gnl\|echTel1\|scaffold_321974 (97443-98091)
	493-1079, gnl\|hg17\|chr19 (41178376-41179114)
	493-1079, gnl\|Hg17\|chr19 (41178427-41179068)
	493-1079, gnl\|loxAfr1\|scaffold_40442 (13596-14276)
	493-1079, gnl\|mm7\|chr7 (27263112-27262544)
	493-1079, gnl\|oryCun1\|scaffold_156135 (7577-6872)
	493-1079, gnl\|panTro1\|chr20 (38022159-38022897)
	493-1079, gnl\|rheMac2\|chr19 (42485086-42485811)
	493-1079, gnl\|rn3\|chr1 (85346466-85345891)

	ece (0.229305)
	fcc (0.197785)
	fbs (0.175346)
	nco (0.161734)
	cli (0.152812)
	hyp (0.142837)
	pty (0.142714)
	cly (0.120642)
	cty (0.10408)
	eje (0.0988338)