Ss1.1-Ova1-OVRM10093C06.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTTGTGGGAAGCTATGCATCCGGAGATGTGGGTTTGGGGTTGAAGAGGACCAAGAATGGC TGACCTTGTGTCCAGAGGAGGTCCTGACAGGTCATTATTGGGCACTGTTTGATGGGCATG GCGGTCCAGCTGCAGCTATCCTGGCTGCCAACACCCTGCACTCCTGCCTGCGCCGGCAGC TAGAGGCTGTGGTAGATGGCATGATGGCCACTCAGCCCCCCATGCATCTCAGTGGGTGCT GCATCTGCCCCAGTGACCCCCAGTTTGTGGAGGAAAAGGGCATTAGGACAGAAGACCTGG TGATTGGGGCTCTGGAGAGTGCCTTCCAGGAGTGTGATGAGGTGATCGGGCGGGAGCTGG AGGCCTCAGGCCAGGTGGGCGGCTGTACTGCCTTGGTGGCTGTGTCCCTGCAGGGAAAGC TGTATGTGGCCAATGCTGGGGATAGCAGGGCCATCTTGGTGCGGAGGGATGAGGTACGGC CCCTGAGCTCTGAGTTCACCCCAGAGACCGAGCGGCAGCGGATTCAGCAGCTGGCCTTTG TCTACCCTGAGCTTTTGGCTGGTGAGTTCACCCGACTGGAGTTCCCTCGGCGACTGAAAG GGGATGACTTGGGGCAGAAGGTTTTGTTCAGGGATCACCACATGAGCGGCTGGAGCTACA AGTGCGTGGAGAAGTCGGATCTCAAGTACCCATTGATCCATGGACAGGGTAGGCAGGCTC GGTTGCTGGGAACACTGGCTGTCTCGAGGGGCCTAGGAGACCATCAGCTCAGAGTCCTGG ACACAAACATTCAGCTCAAGCCCTTCTTGCTCTCTGTCCCACAGGTGACTGTGCTGGATG TGGACCAGCTGGAGCCACAAGAGGAGGACGTGGTTGTCATGGCAACTGATGGGCTCTGGG ATGTCCTGTCCAATGAGCAGGTGGCATGGCTGGTGCGGAGCTTCCTCCCTGGCAACCGAG AGGACCCACACAGGTTCTCGGAGCTGGCTCAAATGCTGATACACAGCACGCAGGGGAAGG ATGACAGTCCTACACAGGAAGGGCAGGTGTCCTATGACGACGTTTCTGTGTTCGTGATTC CCTTGCACAACCACGACCAAAGGC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTTGTGGGAAGCTATGCATCCGGAGATGTGGGTTTGGGGTTGAAGAGGACCAAGAATGGC TGACCTTGTGTCCAGAGGAGGTCCTGACAGGTCATTATTGGGCACTGTTTGATGGGCATG GCGGTCCAGCTGCAGCTATCCTGGCTGCCAACACCCTGCACTCCTGCCTGCGCCGGCAGC TAGAGGCTGTGGTAGATGGCATGATGGCCACTCAGCCCCCCATGCATCTCAGTGGGTGCT GCATCTGCCCCAGTGACCCCCAGTTTGTGGAGGAAAAGGGCATTAGGACAGAAGACCTGG TGATTGGGGCTCTGGAGAGTGCCTTCCAGGAGTGTGATGAGGTGATCGGGCGGGAGCTGG AGGCCTCAGGCCAGGTGGGCGGCTGTACTGCCTTGGTGGCTGTGTCCCTGCAGGGAAAGC TGTATGTGGCCAATGCTGGGGATAGCAGGGCCATCTTGGTGCGGAGGGATGAGGTACGGC CCCTGAGCTCTGAGTTCACCCCAGAGACCGAGCGGCAGCGGATTCAGCAGCTGGCCTTTG TCTACCCTGAGCTTTTGGCTGGTGAGTTCACCCGACTGGAGTTCCCTCGGCGACTGAAAG GGGATGACTTGGGGCAGAAGGTTTTGTTCAGGGATCACCACATGAGCGGCTGGAGCTACA AGTGCGTGGAGAAGTCGGATCTCAAGTACCCATTGATCCATGGACAGGGTAGGCAGGCTC GGTTGCTGGGAACACTGGCTGTCTCGAGGGGCCTAGGAGACCATCAGCTCAGAGTCCTGG ACACAAACATTCAGCTCAAGCCCTTCTTGCTCTCTGTCCCACAGGTGACTGTGCTGGATG TGGACCAGCTGGAGCCACAAGAGGAGGACGTGGTTGTCATGGCAACTGATGGGCTCTGGG ATGTCCTGTCCAATGAGCAGGTGGCATGGCTGGTGCGGAGCTTCCTCCCTGGCAACCGAG AGGACCCACACAGGTTCTCGGAGCTGGCTCAAATGCTGATACACAGCACGCAGGGGAAGG ATGACAGTCCTACACAGGAAGGGCAGGTGTCCTATGACGACGTTTCTGTGTTCGTGATTC CCTTGCACAACCACGACCAAAGGC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 118-353, - strand, RNAz p=0.873986 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 118-353, - strand, RNAz p=0.873986 |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 79-363, gnl|bosTau2|chr22 (36820125-36820411) | |
| 79-363, gnl|Hg17|chr3 (52256028-52256316) | |
| 79-363, gnl|Mm7|chr9 (105927446-105927165) | |
| 533-653, gnl|bosTau2|chr22 (36821467-36821587) | |
| 533-653, gnl|canFam2|chr20 (40513541-40513398) | |
| 533-653, gnl|danRer3|chrNA (27284804-27284933) | |
| 533-653, gnl|dasNov1|scaffold_41857 (1305-1169) | |
| 533-653, gnl|echTel1|scaffold_91916 (1280-1133) | |
| 533-653, gnl|fr1|chrUn (52188128-52188256) | |
| 533-653, gnl|galGal2|chr12 (2631293-2631440) | |
| 533-653, gnl|hg17|chr3 (52257378-52257516) | |
| 533-653, gnl|Hg17|chr3 (52257390-52257510) | |
| 533-653, gnl|loxAfr1|scaffold_137339 (1045-906) | |
| 533-653, gnl|mm7|chr9 (105926173-105926033) | |
| 533-653, gnl|Mm7|chr9 (105926160-105926040) | |
| 533-653, gnl|monDom2|scaffold_5 (71012552-71012383) | |
| 533-653, gnl|oryCun1|scaffold_196786 (14295-14158) | |
| 533-653, gnl|panTro1|chr2 (53871388-53871526) | |
| 533-653, gnl|rheMac2|chr2 (84145842-84145704) | |
| 533-653, gnl|rn3|chr2 (200006105-200006249) | |
| 533-653, gnl|tetNig1|chr19 (5017538-5017400) | |
| 822-978, gnl|bosTau2|chr22 (36822229-36822385) | |
| 822-978, gnl|Hg17|chr3 (52258227-52258383) | |
| 822-978, gnl|Mm7|chr9 (105925389-105925230) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 79-363, gnl|bosTau2|chr22 (36820125-36820411) | |
| 79-363, gnl|Hg17|chr3 (52256028-52256316) | |
| 79-363, gnl|Mm7|chr9 (105927446-105927165) | |
| 533-653, gnl|bosTau2|chr22 (36821467-36821587) | |
| 533-653, gnl|canFam2|chr20 (40513541-40513398) | |
| 533-653, gnl|danRer3|chrNA (27284804-27284933) | |
| 533-653, gnl|dasNov1|scaffold_41857 (1305-1169) | |
| 533-653, gnl|echTel1|scaffold_91916 (1280-1133) | |
| 533-653, gnl|fr1|chrUn (52188128-52188256) | |
| 533-653, gnl|galGal2|chr12 (2631293-2631440) | |
| 533-653, gnl|hg17|chr3 (52257378-52257516) | |
| 533-653, gnl|Hg17|chr3 (52257390-52257510) | |
| 533-653, gnl|loxAfr1|scaffold_137339 (1045-906) | |
| 533-653, gnl|mm7|chr9 (105926173-105926033) | |
| 533-653, gnl|Mm7|chr9 (105926160-105926040) | |
| 533-653, gnl|monDom2|scaffold_5 (71012552-71012383) | |
| 533-653, gnl|oryCun1|scaffold_196786 (14295-14158) | |
| 533-653, gnl|panTro1|chr2 (53871388-53871526) | |
| 533-653, gnl|rheMac2|chr2 (84145842-84145704) | |
| 533-653, gnl|rn3|chr2 (200006105-200006249) | |
| 533-653, gnl|tetNig1|chr19 (5017538-5017400) | |
| 822-978, gnl|bosTau2|chr22 (36822229-36822385) | |
| 822-978, gnl|Hg17|chr3 (52258227-52258383) | |
| 822-978, gnl|Mm7|chr9 (105925389-105925230) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| nco (0.161734) | |
| lnt (0.142308) | |
| che (0.136314) | |
| pla (0.133672) | |
| jca (0.11396) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nco (0.161734) | |
| lnt (0.142308) | |
| che (0.136314) | |
| pla (0.133672) | |
| jca (0.11396) |