Non-Coding RNA Search

Ss1.1-Ova1-OVRM10097B07.5.5

Sequence:


               
               AGCTTTCTCAACTGTGTCACCAAAAGTATAAAGTGTTTTCCATCTCCTCTCCTTTATCCT
CTCCCCTTAAAAAAAAATGTGTGGGGCTTCCTTCGATGGGTGACTCTTGGTGACCTCCTT
AGCAATAATGGCATCAGCGCACTGGCTGTGGCCACTGGGAGGTCTGTCCCACGAATCCTC
ACCGGACGCTCCCGGCTGTCCAGGCTCTCCTTGCTGAAGCCACACTTCCTGCATCACGTT
GGCCACCCTTCACCCTCTCATCGTTTCCAGGAAACAGACTGTGGGCACATGGCAGAGGTG
TCTTTAAGCTGCCATGATACTTACTCAACCTATAGGTCATTGTTAAAGAAGAGTTGCATG
TTTAAGTTTTGTATTAATTTTACGTTATTTTGTATCTAGGTTTAGCAGTTGTAGGGCTAC
GGCTTTCCTCGGGTTTTGTACCAGTGTCCCATTGGAAGTTCTTTGCTACGTCTGGGGCCT
GTGGGGGTGTTTCATGTCCTAGGCATCTGCAGGAGTCAGGCCAGATGGCAGACGTTGCTG
GCGAGCCGGGCTGCTCTGATTAGTAGTGTTAGAACCTGCCAGTGTGAGGCTGGCAGGGGC
CTGGGATATCCTTTATCCAAGAACTGGTCAGACTGCGTCACAATGGACACTCCCCCAGCC
CTGACCACCAGCAGAAGTGGAGGAGCCCGAGTTTCTCTACAGCCTGAGCAGCGCTCCCTG
GAGACCGTCGTGGTCATGGCAACAGCATCTCCTGAAGCCGGACTCTGTGCTGCCCACTGT
GGTCCCTGCTGCTGGGGAAGGGGGTGGGGCAGCTCCAAGGCTGCCCAGGGGGGCAAGGTG
GCCCCCAACCCAGACAGGGTTGGGTAGGGCGGTAGGGGAGCCCCTGCCCAGTGGCCCCCG
AGTGGCGTGAGCCTGCAGGGCCTGCCAAGCGTGGTCTCCGCATTGCCTCTCACTGTGTTC
TCCTCACCTGACGCCTTAATCCCTGCGAGGCCTGCCAGTGAGCTCCCGATTTCAGTATCA
AAGTGTGTCTTTTTAAAAAGCCTTTCGGTTTCATAGGACCTTCTGAAATGATTTCGAGAA
TATTTTATCTGGCTCCAAGGTAGAGCAGACAACAACTTGTTCTTTTCCAGCAAAGTTTCT
GCCAAAGCTGTGGCCGGCCAACTTTTGGGTTGGTTTCTGCCCATTGCATTATATCCCTAA
ACCTCTTTTGGGCCCTGGGGGTCTTGGATTTGACCTTCCTCCTTTGGTAGCTGACTCTGT
GGTGGCAAATAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCTTTCTCAACTGTGTCACCAAAAGTATAAAGTGTTTTCCATCTCCTCTCCTTTATCCT
CTCCCCTTAAAAAAAAATGTGTGGGGCTTCCTTCGATGGGTGACTCTTGGTGACCTCCTT
AGCAATAATGGCATCAGCGCACTGGCTGTGGCCACTGGGAGGTCTGTCCCACGAATCCTC
ACCGGACGCTCCCGGCTGTCCAGGCTCTCCTTGCTGAAGCCACACTTCCTGCATCACGTT
GGCCACCCTTCACCCTCTCATCGTTTCCAGGAAACAGACTGTGGGCACATGGCAGAGGTG
TCTTTAAGCTGCCATGATACTTACTCAACCTATAGGTCATTGTTAAAGAAGAGTTGCATG
TTTAAGTTTTGTATTAATTTTACGTTATTTTGTATCTAGGTTTAGCAGTTGTAGGGCTAC
GGCTTTCCTCGGGTTTTGTACCAGTGTCCCATTGGAAGTTCTTTGCTACGTCTGGGGCCT
GTGGGGGTGTTTCATGTCCTAGGCATCTGCAGGAGTCAGGCCAGATGGCAGACGTTGCTG
GCGAGCCGGGCTGCTCTGATTAGTAGTGTTAGAACCTGCCAGTGTGAGGCTGGCAGGGGC
CTGGGATATCCTTTATCCAAGAACTGGTCAGACTGCGTCACAATGGACACTCCCCCAGCC
CTGACCACCAGCAGAAGTGGAGGAGCCCGAGTTTCTCTACAGCCTGAGCAGCGCTCCCTG
GAGACCGTCGTGGTCATGGCAACAGCATCTCCTGAAGCCGGACTCTGTGCTGCCCACTGT
GGTCCCTGCTGCTGGGGAAGGGGGTGGGGCAGCTCCAAGGCTGCCCAGGGGGGCAAGGTG
GCCCCCAACCCAGACAGGGTTGGGTAGGGCGGTAGGGGAGCCCCTGCCCAGTGGCCCCCG
AGTGGCGTGAGCCTGCAGGGCCTGCCAAGCGTGGTCTCCGCATTGCCTCTCACTGTGTTC
TCCTCACCTGACGCCTTAATCCCTGCGAGGCCTGCCAGTGAGCTCCCGATTTCAGTATCA
AAGTGTGTCTTTTTAAAAAGCCTTTCGGTTTCATAGGACCTTCTGAAATGATTTCGAGAA
TATTTTATCTGGCTCCAAGGTAGAGCAGACAACAACTTGTTCTTTTCCAGCAAAGTTTCT
GCCAAAGCTGTGGCCGGCCAACTTTTGGGTTGGTTTCTGCCCATTGCATTATATCCCTAA
ACCTCTTTTGGGCCCTGGGGGTCTTGGATTTGACCTTCCTCCTTTGGTAGCTGACTCTGT
GGTGGCAAATAC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               524-642, - strand, RNAz p=0.964778
               

               
               800-907, - strand, RNAz p=0.995245

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               524-642, - strand, RNAz p=0.964778
               

               
               800-907, - strand, RNAz p=0.995245

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-1128, gnl|bosTau2|chr28 (1223623-1222476)
               

               
               1-1128, gnl|Hg17|chr1 (227282020-227280913)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1128, gnl|bosTau2|chr28 (1223623-1222476)
               

               
               1-1128, gnl|Hg17|chr1 (227282020-227280913)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               hlv (0.139256)
               

               
               cov (0.132153)
               

               
               clu (0.119646)
               

               
               cty (0.10408)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hlv (0.139256)
               

               
               cov (0.132153)
               

               
               clu (0.119646)
               

               
               cty (0.10408)

	524-642, - strand, RNAz p=0.964778
	800-907, - strand, RNAz p=0.995245

	1-1128, gnl\|bosTau2\|chr28 (1223623-1222476)
	1-1128, gnl\|Hg17\|chr1 (227282020-227280913)