Ss1.1-Ova1-OVRM10097G05.5
Sequence: | Distiller database | More info |
Sequence: | Distiller database | Help | Less info |
GGAGGCAGCGAGTGGTCGCCCGAGAGGGTGGCGGGGCGGCCCGGAAACAGTCCGTGGCCG CGGTTCCCGGGAGCTGGCGAGGTGTCCTCCACGGTGCAGAGACCTGGAATGGCCAAATAT CAAGGTGAAGTTCAAAGTTTGAAACTGGATGATGACTCAGTCATAGAAGGAGTAAGTGAC CAAGTACTTGTGGCAGTTGTGGTCAGTTTCGCTTTGAACTGGATGATGACTCAGTCATAG TTCAGAAATGCACATCAAAACATTCACCCAGAAAACCAAGAGCTAGTAAGGGTGCTTCGG GAACAACTTCAAACAGAACAGGATGTGCCTGCCGCCGCCCGACAGCAGTTCTACACTGAC ATGTACTGTCCAATCTGTTTACATCAAGCTTCCCTCCCTGTTGAAACAAACTGCGGCCAT CTCTTTTGCGGTACCTGCATTATTGCATACTGGCGATACGGTTCATGGCTTGGGGCGATC AGTTGTCCAATCTGCAGGCAAACGGTAACTTTACTCCTAACAGTATTTGGTGAAAATGAC CAGTCTCAGGACGCAATATCACTGCATCAGGATGTTAATGATTATAATCGGAGATTCTCA GGGCAGCCCAGATCTATTATGGAAAGAATTATGGATCTACCCACTTTACTGAGGCATGCA TTCAGGGAGATGTTTTCAGTCGGGGGCCTTTTCTGGATGTTCCGTATCAGGATAATACTT TGTTTAATGGGCGCTTTTTTCTACCTTATATCACCTCTAGATTTTGTACCTGAAGCCTTG TTTGGAATACTAGGCTTTCTAGATGATTTCTTTGTCATCTTCTTGTTGCTCATCTACATC TCTATTATGTATCGAGAAGTAATAACACAAAGACTAAACAGATGAAAAGAATGAGTTTAC AAAAATATTTGAGTGAATGTGTAAAATCAAATAAAAGGACCGTGGCAGTATAAAGCACCT GAATATTATCTTACAAGCTTAAAACACCTGATTATCATTTGGCACATGCCTAGCAACATA TGACTGGAATTTTTACCTGCTGCAGGTTCTAATATTAAGGTTAGAATTATAATGATTTAC AAGTGCATCTTGATTCTGTGTTGTCTATAAAGTCTGTGGGAAAATATGGAATTACATAAG ATGAGATGCTTTTGTATCTTCTTCTCCCCCAGATTACTCAGATTAATTGGGTGTATAGTC AGATGTTGTCAAATGTACAGTTTATCCAATTTATCCTTCTCAGTGAGCACCTACATGATA TCATCACAATAAAATATTGTACAA |
Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
GGAGGCAGCGAGTGGTCGCCCGAGAGGGTGGCGGGGCGGCCCGGAAACAGTCCGTGGCCG CGGTTCCCGGGAGCTGGCGAGGTGTCCTCCACGGTGCAGAGACCTGGAATGGCCAAATAT CAAGGTGAAGTTCAAAGTTTGAAACTGGATGATGACTCAGTCATAGAAGGAGTAAGTGAC CAAGTACTTGTGGCAGTTGTGGTCAGTTTCGCTTTGAACTGGATGATGACTCAGTCATAG TTCAGAAATGCACATCAAAACATTCACCCAGAAAACCAAGAGCTAGTAAGGGTGCTTCGG GAACAACTTCAAACAGAACAGGATGTGCCTGCCGCCGCCCGACAGCAGTTCTACACTGAC ATGTACTGTCCAATCTGTTTACATCAAGCTTCCCTCCCTGTTGAAACAAACTGCGGCCAT CTCTTTTGCGGTACCTGCATTATTGCATACTGGCGATACGGTTCATGGCTTGGGGCGATC AGTTGTCCAATCTGCAGGCAAACGGTAACTTTACTCCTAACAGTATTTGGTGAAAATGAC CAGTCTCAGGACGCAATATCACTGCATCAGGATGTTAATGATTATAATCGGAGATTCTCA GGGCAGCCCAGATCTATTATGGAAAGAATTATGGATCTACCCACTTTACTGAGGCATGCA TTCAGGGAGATGTTTTCAGTCGGGGGCCTTTTCTGGATGTTCCGTATCAGGATAATACTT TGTTTAATGGGCGCTTTTTTCTACCTTATATCACCTCTAGATTTTGTACCTGAAGCCTTG TTTGGAATACTAGGCTTTCTAGATGATTTCTTTGTCATCTTCTTGTTGCTCATCTACATC TCTATTATGTATCGAGAAGTAATAACACAAAGACTAAACAGATGAAAAGAATGAGTTTAC AAAAATATTTGAGTGAATGTGTAAAATCAAATAAAAGGACCGTGGCAGTATAAAGCACCT GAATATTATCTTACAAGCTTAAAACACCTGATTATCATTTGGCACATGCCTAGCAACATA TGACTGGAATTTTTACCTGCTGCAGGTTCTAATATTAAGGTTAGAATTATAATGATTTAC AAGTGCATCTTGATTCTGTGTTGTCTATAAAGTCTGTGGGAAAATATGGAATTACATAAG ATGAGATGCTTTTGTATCTTCTTCTCCCCCAGATTACTCAGATTAATTGGGTGTATAGTC AGATGTTGTCAAATGTACAGTTTATCCAATTTATCCTTCTCAGTGAGCACCTACATGATA TCATCACAATAAAATATTGTACAA |
Coded protein: 1 entry(ies) | More info |
Predicted RNA structure(s): 2 entry(ies) | More info |
Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
100-217, + strand, RNAz p=0.651534 | |
735-854, + strand, RNAz p=0.805013 |
Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
100-217, + strand, RNAz p=0.651534 | |
735-854, + strand, RNAz p=0.805013 |
Homologous human UTR: 2 entry(ies) | More info |
Homologous human UTR: 2 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
3' of BC013422, + | |
5' of BC013422, + |
Aligned organism(s): 24 entry(ies) | More info |
Aligned organism(s): 24 entry(ies) | Help | Less info |
100-217, gnl|bosTau2|chr27 (24070928-24070811) | |
100-217, gnl|canFam2|chr16 (25863074-25862965) | |
100-217, gnl|dasNov1|scaffold_28825 (42389-42280) | |
100-217, gnl|echTel1|scaffold_297439 (18342-18234) | |
100-217, gnl|fr1|chrUn (292376885-292377011) | |
100-217, gnl|galGal2|chrUn (70397633-70397524) | |
100-217, gnl|hg17|chr8 (42862025-42862134) | |
100-217, gnl|Hg17|chr8 (42862173-42862056) | |
100-217, gnl|loxAfr1|scaffold_8415 (58592-58701) | |
100-217, gnl|mm7|chr8 (24880481-24880375) | |
100-217, gnl|Mm7|chr8 (24880334-24880448) | |
100-217, gnl|monDom2|scaffold_1 (79080021-79079915) | |
100-217, gnl|oryCun1|scaffold_172629 (10533-10424) | |
100-217, gnl|panTro1|chr7 (44341211-44341320) | |
100-217, gnl|rheMac2|chr8 (43491530-43491639) | |
319-433, gnl|bosTau2|chr27 (24059894-24059780) | |
319-433, gnl|Hg17|chr8 (42844415-42844301) | |
319-433, gnl|Mm7|chr8 (24885533-24885647) | |
504-615, gnl|bosTau2|chr27 (24050596-24050485) | |
504-615, gnl|Hg17|chr8 (42836156-42836045) | |
504-615, gnl|Mm7|chr8 (24895468-24895579) | |
616-1260, gnl|bosTau2|chr27 (24046590-24045915) | |
616-1260, gnl|Hg17|chr8 (42830728-42830065) | |
616-1260, gnl|Mm7|chr8 (24897300-24897920) |
Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
100-217, gnl|bosTau2|chr27 (24070928-24070811) | |
100-217, gnl|canFam2|chr16 (25863074-25862965) | |
100-217, gnl|dasNov1|scaffold_28825 (42389-42280) | |
100-217, gnl|echTel1|scaffold_297439 (18342-18234) | |
100-217, gnl|fr1|chrUn (292376885-292377011) | |
100-217, gnl|galGal2|chrUn (70397633-70397524) | |
100-217, gnl|hg17|chr8 (42862025-42862134) | |
100-217, gnl|Hg17|chr8 (42862173-42862056) | |
100-217, gnl|loxAfr1|scaffold_8415 (58592-58701) | |
100-217, gnl|mm7|chr8 (24880481-24880375) | |
100-217, gnl|Mm7|chr8 (24880334-24880448) | |
100-217, gnl|monDom2|scaffold_1 (79080021-79079915) | |
100-217, gnl|oryCun1|scaffold_172629 (10533-10424) | |
100-217, gnl|panTro1|chr7 (44341211-44341320) | |
100-217, gnl|rheMac2|chr8 (43491530-43491639) | |
319-433, gnl|bosTau2|chr27 (24059894-24059780) | |
319-433, gnl|Hg17|chr8 (42844415-42844301) | |
319-433, gnl|Mm7|chr8 (24885533-24885647) | |
504-615, gnl|bosTau2|chr27 (24050596-24050485) | |
504-615, gnl|Hg17|chr8 (42836156-42836045) | |
504-615, gnl|Mm7|chr8 (24895468-24895579) | |
616-1260, gnl|bosTau2|chr27 (24046590-24045915) | |
616-1260, gnl|Hg17|chr8 (42830728-42830065) | |
616-1260, gnl|Mm7|chr8 (24897300-24897920) |
Expressed library(ies): 14 entry(ies) | More info |
Expressed library(ies): 14 entry(ies) | Help | Less info |
tes (0.623441) | |
lun (0.451467) | |
cte (0.29274) | |
pty (0.285429) | |
sug (0.254582) | |
mgm (0.180343) | |
nje (0.16592) | |
fat (0.147427) | |
hlv (0.139256) | |
tra (0.123092) | |
ebs (0.118301) | |
jej (0.0989218) | |
eje (0.0988338) | |
ldo (0.0970026) |
Expressed library(ies): 14 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
tes (0.623441) | |
lun (0.451467) | |
cte (0.29274) | |
pty (0.285429) | |
sug (0.254582) | |
mgm (0.180343) | |
nje (0.16592) | |
fat (0.147427) | |
hlv (0.139256) | |
tra (0.123092) | |
ebs (0.118301) | |
jej (0.0989218) | |
eje (0.0988338) | |
ldo (0.0970026) |