Non-Coding RNA Search

Ss1.1-Ova1-OVRM10102A08.5

Sequence:


               
               GGGTTATCACTACAAAAGGACTAGACTAATACAAGGGTTCAATCCATTGTGCCAGGTTCT
TCTAGCCGGATAAACTCAGGAGCCAATGAACTGGAGCCAAGTGGGAGAGTCAGCCTCCCA
GGGTTAAAGGCTCTCCTTTCGCCAGTCGATCTGGCCCCATTCCTTTCGTTGATTGGTCGA
GAGTCCCAATCCGTCGAGGAAGCGTAGCGTGGCGGCCAATTGACGTGGCGTTACTAGGCG
TGTTGCATCCCTGAGGCGGGAGCCGGGCCGCAAGCGAATTTCCTGATTGGCTCTGGTCCG
CGGGTTGCTGGGGAGAGGAGGCACGGAGAGGCGGGCGGGAGTACCCAGGGCAGGCGCTGA
TTGGCTGAGTTGTGAGCACCTCTCCTTCCGATGATTCGGCTCTTCTCGCCTCAGTCTTCG
CAAAGCGTCTGCAGCCGTCGTTTGAGTTGTCGCTGCCGCTGCCCCCTCGCGGATCAGGCA
CTAGCGTCCCCCGCCCGCCTACCGCCCTGGTGCCTCTGGGAGGAAGCGAAAGGGAGGCCG
TCTGCGGGTTTGTCGTTGCCGCTCACCCTCCGCCCGGGAGAGCCGAGCACCGGCCGAGTC
GGTCGCCTGCCACCCTTCGTAGCCGTTACCTGCGGGCCGCCACAGCCGTTGGCCGGGAGA
AGCGCGCGCCATGGCCTCCGGAGCTGATTCCAAAGGTGATGATTTATCAACAGCCATTCT
TAAACAGAAGAATCGTCCCAATCGGTTAATTGTTGATGAAGCCATCAATGAGGACAACAG
TGTGGTATCTTTGTCCCAGCCCAAGATGGATGAGCTGCAGTTGTTCCGAGGTGACACAGT
GTTGCTGAAAGGAAAGAAGAGGCGGGAAGCTGTGTGCATTGTGCTTTCTGATGACACATG
TTCTGATGAGAAGATTCGAATGAATAGAGTTGTTCGGAATAACCTTCGCGTACACCTAGG
GGATGTCATCAGCATCCAGCCATGCCCTGATGTGAAGTACGGCAAACGTATCCATGTACT
ACCCATCGATGACACAGTGGAAGGCATCACTGGCAATCTCTTTGAGGTATACCTTAAGCC
ATACTTCCTGGAAGCTTATCGACCCATCCGGAAAGGAGATATTTTCCTTGTTCGGGGTGG
GATGCGTGCAGTAGAGTTCAAAGTAGTGGAGACGGATCCCAGTCCTTACTGCATTGTTGC
ACCAGACACAGTGATCCACTGTGAAGGAGAGCCTAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGTTATCACTACAAAAGGACTAGACTAATACAAGGGTTCAATCCATTGTGCCAGGTTCT
TCTAGCCGGATAAACTCAGGAGCCAATGAACTGGAGCCAAGTGGGAGAGTCAGCCTCCCA
GGGTTAAAGGCTCTCCTTTCGCCAGTCGATCTGGCCCCATTCCTTTCGTTGATTGGTCGA
GAGTCCCAATCCGTCGAGGAAGCGTAGCGTGGCGGCCAATTGACGTGGCGTTACTAGGCG
TGTTGCATCCCTGAGGCGGGAGCCGGGCCGCAAGCGAATTTCCTGATTGGCTCTGGTCCG
CGGGTTGCTGGGGAGAGGAGGCACGGAGAGGCGGGCGGGAGTACCCAGGGCAGGCGCTGA
TTGGCTGAGTTGTGAGCACCTCTCCTTCCGATGATTCGGCTCTTCTCGCCTCAGTCTTCG
CAAAGCGTCTGCAGCCGTCGTTTGAGTTGTCGCTGCCGCTGCCCCCTCGCGGATCAGGCA
CTAGCGTCCCCCGCCCGCCTACCGCCCTGGTGCCTCTGGGAGGAAGCGAAAGGGAGGCCG
TCTGCGGGTTTGTCGTTGCCGCTCACCCTCCGCCCGGGAGAGCCGAGCACCGGCCGAGTC
GGTCGCCTGCCACCCTTCGTAGCCGTTACCTGCGGGCCGCCACAGCCGTTGGCCGGGAGA
AGCGCGCGCCATGGCCTCCGGAGCTGATTCCAAAGGTGATGATTTATCAACAGCCATTCT
TAAACAGAAGAATCGTCCCAATCGGTTAATTGTTGATGAAGCCATCAATGAGGACAACAG
TGTGGTATCTTTGTCCCAGCCCAAGATGGATGAGCTGCAGTTGTTCCGAGGTGACACAGT
GTTGCTGAAAGGAAAGAAGAGGCGGGAAGCTGTGTGCATTGTGCTTTCTGATGACACATG
TTCTGATGAGAAGATTCGAATGAATAGAGTTGTTCGGAATAACCTTCGCGTACACCTAGG
GGATGTCATCAGCATCCAGCCATGCCCTGATGTGAAGTACGGCAAACGTATCCATGTACT
ACCCATCGATGACACAGTGGAAGGCATCACTGGCAATCTCTTTGAGGTATACCTTAAGCC
ATACTTCCTGGAAGCTTATCGACCCATCCGGAAAGGAGATATTTTCCTTGTTCGGGGTGG
GATGCGTGCAGTAGAGTTCAAAGTAGTGGAGACGGATCCCAGTCCTTACTGCATTGTTGC
ACCAGACACAGTGATCCACTGTGAAGGAGAGCCTAT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               823-972, - strand, RNAz p=0.651987

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               823-972, - strand, RNAz p=0.651987

Aligned organism(s): 20 entry(ies)

More info

Aligned organism(s): 20 entry(ies)

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               4-687, gnl|bosTau2|chr8 (27865700-27865018)
               

               
               4-687, gnl|Hg17|chr9 (35063026-35062334)
               

               
               4-687, gnl|Mm7|chr4 (43014635-43013976)
               


               
               788-972, gnl|bosTau2|chr8 (27860956-27860773)
               

               
               788-972, gnl|canFam2|chr11 (54676655-54676841)
               

               
               788-972, gnl|danRer3|chr5 (49766439-49766620)
               

               
               788-972, gnl|echTel1|scaffold_317126 (4119-3933)
               

               
               788-972, gnl|fr1|chrUn (197877919-197878105)
               

               
               788-972, gnl|galGal2|chrZ_random (7960125-7960311)
               

               
               788-972, gnl|hg17|chr9 (35057882-35058068)
               

               
               788-972, gnl|Hg17|chr9 (35058071-35057888)
               

               
               788-972, gnl|loxAfr1|scaffold_105252 (4249-4435)
               

               
               788-972, gnl|mm7|chr4 (43009704-43009890)
               

               
               788-972, gnl|Mm7|chr4 (43009900-43009710)
               

               
               788-972, gnl|monDom2|scaffold_17 (46859153-46858967)
               

               
               788-972, gnl|panTro1|chr11 (35613604-35613790)
               

               
               788-972, gnl|rheMac2|chr15 (42486300-42486116)
               

               
               788-972, gnl|rn3|chr5 (59486732-59486918)
               

               
               788-972, gnl|tetNig1|chr12 (3129446-3129631)
               

               
               788-972, gnl|xenTro1|scaffold_713 (538848-538662)

Aligned organism(s): 20 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-687, gnl|bosTau2|chr8 (27865700-27865018)
               

               
               4-687, gnl|Hg17|chr9 (35063026-35062334)
               

               
               4-687, gnl|Mm7|chr4 (43014635-43013976)
               


               
               788-972, gnl|bosTau2|chr8 (27860956-27860773)
               

               
               788-972, gnl|canFam2|chr11 (54676655-54676841)
               

               
               788-972, gnl|danRer3|chr5 (49766439-49766620)
               

               
               788-972, gnl|echTel1|scaffold_317126 (4119-3933)
               

               
               788-972, gnl|fr1|chrUn (197877919-197878105)
               

               
               788-972, gnl|galGal2|chrZ_random (7960125-7960311)
               

               
               788-972, gnl|hg17|chr9 (35057882-35058068)
               

               
               788-972, gnl|Hg17|chr9 (35058071-35057888)
               

               
               788-972, gnl|loxAfr1|scaffold_105252 (4249-4435)
               

               
               788-972, gnl|mm7|chr4 (43009704-43009890)
               

               
               788-972, gnl|Mm7|chr4 (43009900-43009710)
               

               
               788-972, gnl|monDom2|scaffold_17 (46859153-46858967)
               

               
               788-972, gnl|panTro1|chr11 (35613604-35613790)
               

               
               788-972, gnl|rheMac2|chr15 (42486300-42486116)
               

               
               788-972, gnl|rn3|chr5 (59486732-59486918)
               

               
               788-972, gnl|tetNig1|chr12 (3129446-3129631)
               

               
               788-972, gnl|xenTro1|scaffold_713 (538848-538662)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

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               csp (0.161186)
               

               
               cag (0.151194)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csp (0.161186)
               

               
               cag (0.151194)

	4-687, gnl\|bosTau2\|chr8 (27865700-27865018)
	4-687, gnl\|Hg17\|chr9 (35063026-35062334)
	4-687, gnl\|Mm7\|chr4 (43014635-43013976)

	788-972, gnl\|bosTau2\|chr8 (27860956-27860773)
	788-972, gnl\|canFam2\|chr11 (54676655-54676841)
	788-972, gnl\|danRer3\|chr5 (49766439-49766620)
	788-972, gnl\|echTel1\|scaffold_317126 (4119-3933)
	788-972, gnl\|fr1\|chrUn (197877919-197878105)
	788-972, gnl\|galGal2\|chrZ_random (7960125-7960311)
	788-972, gnl\|hg17\|chr9 (35057882-35058068)
	788-972, gnl\|Hg17\|chr9 (35058071-35057888)
	788-972, gnl\|loxAfr1\|scaffold_105252 (4249-4435)
	788-972, gnl\|mm7\|chr4 (43009704-43009890)
	788-972, gnl\|Mm7\|chr4 (43009900-43009710)
	788-972, gnl\|monDom2\|scaffold_17 (46859153-46858967)
	788-972, gnl\|panTro1\|chr11 (35613604-35613790)
	788-972, gnl\|rheMac2\|chr15 (42486300-42486116)
	788-972, gnl\|rn3\|chr5 (59486732-59486918)
	788-972, gnl\|tetNig1\|chr12 (3129446-3129631)
	788-972, gnl\|xenTro1\|scaffold_713 (538848-538662)