Non-Coding RNA Search

Ss1.1-Ova1-OVRM10103C12.5

Sequence:


               
               ATTCTGCACGGACTGCCGGGCAGCACTGACACTCTGGAGAAGGTCTGCCTCTGTGTGCGC
TGCCCCGGTGAGAATCCCCAACGACAGCTCCACTTTCCAGTGGAGGAGGAAAAAAATCTC
CGTCTACTCTCTTGATGAAGGACAGAGCTTTGATCATTTTTATTCAGGCTTGTTTTGGCC
GGAGGTTTCAGGTTGCATGCGAGCAGATGAATTCCACAGCTGGAACTGAGGCACAGAGCA
ATAAACACAGTGGAGCCCATCTCTGCCGTGGTGAGAGGGGGCATCAGAAGTGACAACAAT
GACAAGGACCCAAGGACCGTCCTTCTGACAAGTTTCAGGTAAGATTCTATTTATGCCCCA
ATTCTTGTATTTTTGCATCCTTGTGGTTGAAAGGGACATTGAGCTAGAAGGCAAGTGTCG
AGAGGGAAATCTTTCCGTGAGTAGCATCTGCTGTCACTTGCCTGCAAACCTGTGTTCTCA
GGGCTTTGTGTTACTGGAATCATCGGAGGTGAGGTGTGAGCGGGGCTGGGCAGAAGCATG
AGTTGCTTTTTATGTCTGTCTGGTGACATTTATCATGCTGTATAAATTCCTATCTGGAAA
AAATTCTGTTTGATGATAGTTAGCAATGTTTTGTGCAATATAGAGCAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTCTGCACGGACTGCCGGGCAGCACTGACACTCTGGAGAAGGTCTGCCTCTGTGTGCGC
TGCCCCGGTGAGAATCCCCAACGACAGCTCCACTTTCCAGTGGAGGAGGAAAAAAATCTC
CGTCTACTCTCTTGATGAAGGACAGAGCTTTGATCATTTTTATTCAGGCTTGTTTTGGCC
GGAGGTTTCAGGTTGCATGCGAGCAGATGAATTCCACAGCTGGAACTGAGGCACAGAGCA
ATAAACACAGTGGAGCCCATCTCTGCCGTGGTGAGAGGGGGCATCAGAAGTGACAACAAT
GACAAGGACCCAAGGACCGTCCTTCTGACAAGTTTCAGGTAAGATTCTATTTATGCCCCA
ATTCTTGTATTTTTGCATCCTTGTGGTTGAAAGGGACATTGAGCTAGAAGGCAAGTGTCG
AGAGGGAAATCTTTCCGTGAGTAGCATCTGCTGTCACTTGCCTGCAAACCTGTGTTCTCA
GGGCTTTGTGTTACTGGAATCATCGGAGGTGAGGTGTGAGCGGGGCTGGGCAGAAGCATG
AGTTGCTTTTTATGTCTGTCTGGTGACATTTATCATGCTGTATAAATTCCTATCTGGAAA
AAATTCTGTTTGATGATAGTTAGCAATGTTTTGTGCAATATAGAGCAT

Aligned organism(s): 16 entry(ies)

More info

Aligned organism(s): 16 entry(ies)

Help | Less info


               
               1-194, gnl|bosTau2|chr5 (36093207-36093395)
               

               
               1-194, gnl|canFam2|chr15 (40090654-40090972)
               

               
               1-194, gnl|dasNov1|scaffold_48 (398893-398580)
               

               
               1-194, gnl|echTel1|scaffold_315069 (93021-93333)
               

               
               1-194, gnl|galGal2|chr1 (43023762-43024078)
               

               
               1-194, gnl|hg17|chr12 (96358950-96359264)
               

               
               1-194, gnl|Hg17|chr12 (96359052-96359244)
               

               
               1-194, gnl|loxAfr1|scaffold_62393 (10834-11146)
               

               
               1-194, gnl|mm7|chr10 (91724121-91723781)
               

               
               1-194, gnl|Mm7|chr10 (91724017-91723799)
               

               
               1-194, gnl|monDom2|scaffold_34 (18225311-18225001)
               

               
               1-194, gnl|oryCun1|scaffold_206334 (143833-143515)
               

               
               1-194, gnl|panTro1|chr10 (98787027-98787341)
               

               
               1-194, gnl|rheMac2|chr11 (98684700-98685014)
               

               
               1-194, gnl|rn3|chr7 (29191476-29191110)
               

               
               1-194, gnl|xenTro1|scaffold_747 (220645-220300)

Aligned organism(s): 16 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-194, gnl|bosTau2|chr5 (36093207-36093395)
               

               
               1-194, gnl|canFam2|chr15 (40090654-40090972)
               

               
               1-194, gnl|dasNov1|scaffold_48 (398893-398580)
               

               
               1-194, gnl|echTel1|scaffold_315069 (93021-93333)
               

               
               1-194, gnl|galGal2|chr1 (43023762-43024078)
               

               
               1-194, gnl|hg17|chr12 (96358950-96359264)
               

               
               1-194, gnl|Hg17|chr12 (96359052-96359244)
               

               
               1-194, gnl|loxAfr1|scaffold_62393 (10834-11146)
               

               
               1-194, gnl|mm7|chr10 (91724121-91723781)
               

               
               1-194, gnl|Mm7|chr10 (91724017-91723799)
               

               
               1-194, gnl|monDom2|scaffold_34 (18225311-18225001)
               

               
               1-194, gnl|oryCun1|scaffold_206334 (143833-143515)
               

               
               1-194, gnl|panTro1|chr10 (98787027-98787341)
               

               
               1-194, gnl|rheMac2|chr11 (98684700-98685014)
               

               
               1-194, gnl|rn3|chr7 (29191476-29191110)
               

               
               1-194, gnl|xenTro1|scaffold_747 (220645-220300)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               cty (0.10408)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.10408)

	1-194, gnl\|bosTau2\|chr5 (36093207-36093395)
	1-194, gnl\|canFam2\|chr15 (40090654-40090972)
	1-194, gnl\|dasNov1\|scaffold_48 (398893-398580)
	1-194, gnl\|echTel1\|scaffold_315069 (93021-93333)
	1-194, gnl\|galGal2\|chr1 (43023762-43024078)
	1-194, gnl\|hg17\|chr12 (96358950-96359264)
	1-194, gnl\|Hg17\|chr12 (96359052-96359244)
	1-194, gnl\|loxAfr1\|scaffold_62393 (10834-11146)
	1-194, gnl\|mm7\|chr10 (91724121-91723781)
	1-194, gnl\|Mm7\|chr10 (91724017-91723799)
	1-194, gnl\|monDom2\|scaffold_34 (18225311-18225001)
	1-194, gnl\|oryCun1\|scaffold_206334 (143833-143515)
	1-194, gnl\|panTro1\|chr10 (98787027-98787341)
	1-194, gnl\|rheMac2\|chr11 (98684700-98685014)
	1-194, gnl\|rn3\|chr7 (29191476-29191110)
	1-194, gnl\|xenTro1\|scaffold_747 (220645-220300)