Non-Coding RNA Search

Ss1.1-Ova1-OVRM10104E09.5

Sequence:


               
               CCCTTTTCCACGGCACCCTGGCCCTCGCCCCAATGCTGGAGGTGGCCCTCACCCTGATTG
ATTCATGGTGCAAAGATAACAGCTATGTCATTGCTGGTTATTATCAAGCTAACGAGCGAG
TAAAGGATGCCAGTCCAAACCAGGTTGCAGAAAAGGTGGCCTCCAGGATCGCCGAGGGCT
TCAGTGACACAGCCCTCATCATGGTGGACAACACTAAGTTTACGATGGACTGCGTGGTAC
CTACCATCCATGTGTACGAACACCATGAGAACAAGTGGCGCTGCAGAGACCCACACTATG
ATTACTGTGAAGACTGGCCGGAGGCCCAGCGCATCTCCGCGTCGCTCCTGGACAGCCGGT
CCTACGAGACGCTGGTGGACTTTGATAACCACCTGGATGACATTCGGAATGACTGGACGA
ACCCCGAGATCAACAAAGCCGTGCTGCACCTGTGCTAGGGAGGGGGTTCGGGGACCGGGC
TCCGGGCGTTTCCACTGCCCCGAAGAGGAAAAGCTATTTTTAAGTGTAGATAAACGAGCT
CGTGGCCTGGGTGGAAAGCTGGCCCGTTTCAGAAGTGGCCCGTGCCTTGGAGGAGGCCGG
AAGGTCCTGTCCGTTGTCTGCCTCACGCAGAGCCTCTGGAACCGGGCCCGTCAGCCCGTC
GGCCCGTCCCTGTGGCGTCCTTCCCAGTGTACGTTACGCTCATTCTCCAAATCAAAGCCA
CTCCTGCTTGTCCAAGATTGCTCCCATTAAACAGTTTTAATTAACCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCTTTTCCACGGCACCCTGGCCCTCGCCCCAATGCTGGAGGTGGCCCTCACCCTGATTG
ATTCATGGTGCAAAGATAACAGCTATGTCATTGCTGGTTATTATCAAGCTAACGAGCGAG
TAAAGGATGCCAGTCCAAACCAGGTTGCAGAAAAGGTGGCCTCCAGGATCGCCGAGGGCT
TCAGTGACACAGCCCTCATCATGGTGGACAACACTAAGTTTACGATGGACTGCGTGGTAC
CTACCATCCATGTGTACGAACACCATGAGAACAAGTGGCGCTGCAGAGACCCACACTATG
ATTACTGTGAAGACTGGCCGGAGGCCCAGCGCATCTCCGCGTCGCTCCTGGACAGCCGGT
CCTACGAGACGCTGGTGGACTTTGATAACCACCTGGATGACATTCGGAATGACTGGACGA
ACCCCGAGATCAACAAAGCCGTGCTGCACCTGTGCTAGGGAGGGGGTTCGGGGACCGGGC
TCCGGGCGTTTCCACTGCCCCGAAGAGGAAAAGCTATTTTTAAGTGTAGATAAACGAGCT
CGTGGCCTGGGTGGAAAGCTGGCCCGTTTCAGAAGTGGCCCGTGCCTTGGAGGAGGCCGG
AAGGTCCTGTCCGTTGTCTGCCTCACGCAGAGCCTCTGGAACCGGGCCCGTCAGCCCGTC
GGCCCGTCCCTGTGGCGTCCTTCCCAGTGTACGTTACGCTCATTCTCCAAATCAAAGCCA
CTCCTGCTTGTCCAAGATTGCTCCCATTAAACAGTTTTAATTAACCTT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|61859324|ref|XP_587906.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61859324|ref|XP_587906.1|

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               299-768, gnl|bosTau2|chr18 (8034876-8034410)
               

               
               299-768, gnl|Hg17|chr16 (84370974-84370506)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               299-768, gnl|bosTau2|chr18 (8034876-8034410)
               

               
               299-768, gnl|Hg17|chr16 (84370974-84370506)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               cag (0.302389)
               

               
               nmm (0.132802)
               

               
               jca (0.11396)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cag (0.302389)
               

               
               nmm (0.132802)
               

               
               jca (0.11396)

	299-768, gnl\|bosTau2\|chr18 (8034876-8034410)
	299-768, gnl\|Hg17\|chr16 (84370974-84370506)