Non-Coding RNA Search

Ss1.1-Ova1-OVRM10105F06.5

Sequence:


               
               AGGAGAAAGGAAGGCGCTCCAGTTCCGGGTCAGGCCCTTCGCTACCCTTCCTCGGCCTTC
ACCATGGCGGGTAACAGCGGCTCCGGGGCTGCGGCGGCGGCGAATCTGAATGCAGTGAGG
GAGACCATGGACGTTCTGCTTGAGATTTCAAGAATTTTGAATACTGGATTAGATATGGAA
ACTCTGTCTATATGTGTCCGGCTCTGCGAACAAGGAATTAACCCAGAAGCTTTATCTTCA
GTTATTAAGGAACTTCGCAAGGCCACTGAAGCATTAAAGGCTGCTGAAAATATGACAAGC
TGACTTTCTGAAGAAATGCGATGAGCTATGTCAAGCTCTGCAGAAGGATTGAAGACGGCA
TTGTAGTCAAGAATGTACAGTGAACTGACGGCACGTAGCAGTGTGGAAACATTGTCCTTT
TTGAAAGAATTATAAAACCATAGCTTTATAAATCAGTGGAAAGTGGCTTATAGAAAGAAC
TATCATTCGTGTTTACACCCGTCCTTCTTTCTTAACGGCTGTAATCCTTTGGCGTTGCTG
TGTTCATATTTATGTATGCCTTATTTATAGCACTGATAGCTTTAATTTTCTAAGCAGTCT
GTCTATCAGATGTGCACATCTGCTGGGCCCAGTTGAAGTATAGTGGAACCCATCATTAGT
AATGTTTTAGTTATGACTTGTTGACATTTCCATTATAAACTTTAATTTTGAATTATTTAT
GCAAAATAGCTGTGGATTTATGTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGAGAAAGGAAGGCGCTCCAGTTCCGGGTCAGGCCCTTCGCTACCCTTCCTCGGCCTTC
ACCATGGCGGGTAACAGCGGCTCCGGGGCTGCGGCGGCGGCGAATCTGAATGCAGTGAGG
GAGACCATGGACGTTCTGCTTGAGATTTCAAGAATTTTGAATACTGGATTAGATATGGAA
ACTCTGTCTATATGTGTCCGGCTCTGCGAACAAGGAATTAACCCAGAAGCTTTATCTTCA
GTTATTAAGGAACTTCGCAAGGCCACTGAAGCATTAAAGGCTGCTGAAAATATGACAAGC
TGACTTTCTGAAGAAATGCGATGAGCTATGTCAAGCTCTGCAGAAGGATTGAAGACGGCA
TTGTAGTCAAGAATGTACAGTGAACTGACGGCACGTAGCAGTGTGGAAACATTGTCCTTT
TTGAAAGAATTATAAAACCATAGCTTTATAAATCAGTGGAAAGTGGCTTATAGAAAGAAC
TATCATTCGTGTTTACACCCGTCCTTCTTTCTTAACGGCTGTAATCCTTTGGCGTTGCTG
TGTTCATATTTATGTATGCCTTATTTATAGCACTGATAGCTTTAATTTTCTAAGCAGTCT
GTCTATCAGATGTGCACATCTGCTGGGCCCAGTTGAAGTATAGTGGAACCCATCATTAGT
AATGTTTTAGTTATGACTTGTTGACATTTCCATTATAAACTTTAATTTTGAATTATTTAT
GCAAAATAGCTGTGGATTTATGTT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|54648192|gb|AAH85033.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|54648192|gb|AAH85033.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               475-586, + strand, RNAz p=0.913689

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               475-586, + strand, RNAz p=0.913689

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               5' of AK025522, +

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               5' of AK025522, +

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               1-132, gnl|bosTau2|chr12 (21798863-21798997)
               

               
               1-132, gnl|Hg17|chr13 (72199804-72199664)
               

               
               1-132, gnl|Mm7|chr14 (93446583-93446447)
               


               
               278-744, gnl|bosTau2|chr12 (21812189-21812664)
               

               
               278-744, gnl|Hg17|chr13 (72182486-72182010)
               

               
               278-744, gnl|Mm7|chr14 (93436643-93436196)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-132, gnl|bosTau2|chr12 (21798863-21798997)
               

               
               1-132, gnl|Hg17|chr13 (72199804-72199664)
               

               
               1-132, gnl|Mm7|chr14 (93446583-93446447)
               


               
               278-744, gnl|bosTau2|chr12 (21812189-21812664)
               

               
               278-744, gnl|Hg17|chr13 (72182486-72182010)
               

               
               278-744, gnl|Mm7|chr14 (93436643-93436196)

Expressed library(ies): 7 entry(ies)

More info

Expressed library(ies): 7 entry(ies)

Help | Less info


               
               cty (0.31224)
               

               
               sme (0.305437)
               

               
               clu (0.239292)
               

               
               pgl (0.236967)
               

               
               isp (0.150376)
               

               
               liv (0.146284)
               

               
               eru (0.120048)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.31224)
               

               
               sme (0.305437)
               

               
               clu (0.239292)
               

               
               pgl (0.236967)
               

               
               isp (0.150376)
               

               
               liv (0.146284)
               

               
               eru (0.120048)

	1-132, gnl\|bosTau2\|chr12 (21798863-21798997)
	1-132, gnl\|Hg17\|chr13 (72199804-72199664)
	1-132, gnl\|Mm7\|chr14 (93446583-93446447)

	278-744, gnl\|bosTau2\|chr12 (21812189-21812664)
	278-744, gnl\|Hg17\|chr13 (72182486-72182010)
	278-744, gnl\|Mm7\|chr14 (93436643-93436196)

	cty (0.31224)
	sme (0.305437)
	clu (0.239292)
	pgl (0.236967)
	isp (0.150376)
	liv (0.146284)
	eru (0.120048)