Non-Coding RNA Search

Ss1.1-Ova1-OVRM10106B12.5

Sequence:


               
               GGGGCGGCGGCGGCTGGAGCTCAGCGAAGCTCGAGGGACCCCATTGGGGGAATTTGATCC
AAGGAAGCTGTGAGATTGCCGGGGGAGGAGAAGCTCACAGATCATTGTGTCCACTTCCAG
GGGTAGGAGGAGCCGGCGGAGCGGGCCTCTCGGCGTCCTCTGCACTGCTGCACCCTGCCC
CGTCCTGCCGGGATCATGGTCTGCGGCAGCCCAGGAGGCATGCTGTTGCTGCGGGCTGGG
CTGCTTGCCCTGGCGGCGCTCTGCCTGCTCCGCGTGCCTGGAGCCCGGGCTGCAGCCTGT
GAGCCCGTCCGCATCCCCCTGTGCAAGTCTCTGCCATGGAACATGACCAAGATGCCCAAC
CACCTGCACCACAGCACTCAGGCCAACGCCATCCTGGCCATCGAGCAGTTCGAAGGTCTG
CTGGGCACCCACTGCAGCCCGGATCTGCTCTTCTTCCTCTGTGCCATGTACGCGCCCATC
TGCACCATTGACTTCCAACACGAGCCTATTAAGCCCTGCAAGTCTGTGTGCGAGCGGGCC
CGGCAGGGCTGTGAGCCCATTCTCATCAAGTACCGCCACTCGTGGCCGGAAAGCCTGGCC
TGCGAAGAGCTGCCGGTTTATGACCGTGGCGTATGCATCTCTCCAGAGGCCATTGTCACT
GCCGATGGAGCAGATTTTCCTATGGATTCTAGTAATGGAAACTGTAGAGGGGCAAGCAGT
GAACGCTGCAAATGTAAACCTATTAGAGCTACACAGAAGACCTATTTCCGAAACAATTAC
AACTATGTCATTCGTGCTAAAGTTAAAGAAGTAAAGATCAAGTGCCATGATGTGACTGCA
GTAGTTGAGGTGAAGGAGATTTTAAAGGCTTCCCTGGTCAACATTCCAAAGGACACTGTT
AACCTTTACACCAGCTCTGGCTGCCTGTGTCCTCCACTTAACGTCAATGAGGAGTATATC
ATCATGGGCTATGAAGATGAGGAACGCTCCAGATTACTGTTGGTGGAAGGTTCTATTGCT
GAGAAATGGAAGGATCGGCTTGGTAAAAAAGTTAAGCGCTGGGATACGAAGCTCCGTCAT
CTAGGACTGAATAAAAGTGATTCTAGTCAGAGTGATTCCACCCAGAGTCAGAAATCTGGC
AGGAGCTCTAACCCTCGGCAAGCACGCAACTGAATCCTGAAATCCAGAAAATCCTCCCTG
GACTTCCTATTAAGACTTGCATTGCTGGACTAGCAAAGGAAAATTGCACTATTGCACGTC
ATATTCTATTTTGTACCACACAAATCAGGTGGTAAACTGATATTGCTTCTACTTTTTCTT
TTGTTTTCTGCTTTTCTCCTTCTCCCCATCCCCCCCCCCCTTTGGTGGTCTGGGTGCAGA
TCCTTAAATATAGTATATGTATTCTATTTCACTAATCATGGGAAAACTATTCTTTGCTAT
AATAATAAATTAAACATGTTGATACCAGGGCCTCTTTGCTGGAGTAAATGTGAATTTACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGGCGGCGGCGGCTGGAGCTCAGCGAAGCTCGAGGGACCCCATTGGGGGAATTTGATCC
AAGGAAGCTGTGAGATTGCCGGGGGAGGAGAAGCTCACAGATCATTGTGTCCACTTCCAG
GGGTAGGAGGAGCCGGCGGAGCGGGCCTCTCGGCGTCCTCTGCACTGCTGCACCCTGCCC
CGTCCTGCCGGGATCATGGTCTGCGGCAGCCCAGGAGGCATGCTGTTGCTGCGGGCTGGG
CTGCTTGCCCTGGCGGCGCTCTGCCTGCTCCGCGTGCCTGGAGCCCGGGCTGCAGCCTGT
GAGCCCGTCCGCATCCCCCTGTGCAAGTCTCTGCCATGGAACATGACCAAGATGCCCAAC
CACCTGCACCACAGCACTCAGGCCAACGCCATCCTGGCCATCGAGCAGTTCGAAGGTCTG
CTGGGCACCCACTGCAGCCCGGATCTGCTCTTCTTCCTCTGTGCCATGTACGCGCCCATC
TGCACCATTGACTTCCAACACGAGCCTATTAAGCCCTGCAAGTCTGTGTGCGAGCGGGCC
CGGCAGGGCTGTGAGCCCATTCTCATCAAGTACCGCCACTCGTGGCCGGAAAGCCTGGCC
TGCGAAGAGCTGCCGGTTTATGACCGTGGCGTATGCATCTCTCCAGAGGCCATTGTCACT
GCCGATGGAGCAGATTTTCCTATGGATTCTAGTAATGGAAACTGTAGAGGGGCAAGCAGT
GAACGCTGCAAATGTAAACCTATTAGAGCTACACAGAAGACCTATTTCCGAAACAATTAC
AACTATGTCATTCGTGCTAAAGTTAAAGAAGTAAAGATCAAGTGCCATGATGTGACTGCA
GTAGTTGAGGTGAAGGAGATTTTAAAGGCTTCCCTGGTCAACATTCCAAAGGACACTGTT
AACCTTTACACCAGCTCTGGCTGCCTGTGTCCTCCACTTAACGTCAATGAGGAGTATATC
ATCATGGGCTATGAAGATGAGGAACGCTCCAGATTACTGTTGGTGGAAGGTTCTATTGCT
GAGAAATGGAAGGATCGGCTTGGTAAAAAAGTTAAGCGCTGGGATACGAAGCTCCGTCAT
CTAGGACTGAATAAAAGTGATTCTAGTCAGAGTGATTCCACCCAGAGTCAGAAATCTGGC
AGGAGCTCTAACCCTCGGCAAGCACGCAACTGAATCCTGAAATCCAGAAAATCCTCCCTG
GACTTCCTATTAAGACTTGCATTGCTGGACTAGCAAAGGAAAATTGCACTATTGCACGTC
ATATTCTATTTTGTACCACACAAATCAGGTGGTAAACTGATATTGCTTCTACTTTTTCTT
TTGTTTTCTGCTTTTCTCCTTCTCCCCATCCCCCCCCCCCTTTGGTGGTCTGGGTGCAGA
TCCTTAAATATAGTATATGTATTCTATTTCACTAATCATGGGAAAACTATTCTTTGCTAT
AATAATAAATTAAACATGTTGATACCAGGGCCTCTTTGCTGGAGTAAATGTGAATTTACT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q53QN4_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q53QN4_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               352-471, - strand, RNAz p=0.935255

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               352-471, - strand, RNAz p=0.935255

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-671, gnl|bosTau2|chr2 (6157794-6157121)
               

               
               1-671, gnl|Hg17|chr2 (183556978-183556311)
               

               
               1-671, gnl|Mm7|chr2 (80290752-80290081)
               


               
               297-605, gnl|bosTau2|chr19 (37706070-37705768)
               

               
               297-605, gnl|Hg17|chr17 (39990696-39990998)
               

               
               297-605, gnl|Mm7|chr11 (102713901-102714203)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-671, gnl|bosTau2|chr2 (6157794-6157121)
               

               
               1-671, gnl|Hg17|chr2 (183556978-183556311)
               

               
               1-671, gnl|Mm7|chr2 (80290752-80290081)
               


               
               297-605, gnl|bosTau2|chr19 (37706070-37705768)
               

               
               297-605, gnl|Hg17|chr17 (39990696-39990998)
               

               
               297-605, gnl|Mm7|chr11 (102713901-102714203)

Expressed library(ies): 15 entry(ies)

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Expressed library(ies): 15 entry(ies)

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               tbr (0.462535)
               

               
               cty (0.41632)
               

               
               bla (0.373042)
               

               
               ldo (0.291008)
               

               
               col (0.195008)
               

               
               gul (0.177588)
               

               
               cut (0.169924)
               

               
               isp (0.150376)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               nca (0.136874)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)
               

               
               sug (0.127291)
               

               
               tra (0.123092)

Expressed library(ies): 15 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tbr (0.462535)
               

               
               cty (0.41632)
               

               
               bla (0.373042)
               

               
               ldo (0.291008)
               

               
               col (0.195008)
               

               
               gul (0.177588)
               

               
               cut (0.169924)
               

               
               isp (0.150376)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               nca (0.136874)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)
               

               
               sug (0.127291)
               

               
               tra (0.123092)

	1-671, gnl\|bosTau2\|chr2 (6157794-6157121)
	1-671, gnl\|Hg17\|chr2 (183556978-183556311)
	1-671, gnl\|Mm7\|chr2 (80290752-80290081)

	297-605, gnl\|bosTau2\|chr19 (37706070-37705768)
	297-605, gnl\|Hg17\|chr17 (39990696-39990998)
	297-605, gnl\|Mm7\|chr11 (102713901-102714203)

	tbr (0.462535)
	cty (0.41632)
	bla (0.373042)
	ldo (0.291008)
	col (0.195008)
	gul (0.177588)
	cut (0.169924)
	isp (0.150376)
	fat (0.147427)
	liv (0.146284)
	nca (0.136874)
	ssp (0.13552)
	pla (0.133672)
	sug (0.127291)
	tra (0.123092)