Non-Coding RNA Search

Ss1.1-Ova1-OVRM10112G10.5

Sequence:


               
               CAGAACTGGCATGAACCTTCTAATTGTGAAGGCTGTCCAAATGCACTATTTTTTTCTCCT
GCTAGAGGAAGTTACATCCCGAGCAGTAGCTCAGCTCTCTGGTAAGTGTAACATGTGAGC
ATTACTAGGCATTTCATCCTGCAGTTCTGCAGTCTTTGCTCTTCAGACTGTTGCTCAGTT
GGAATGCTTCTGTGGGGCCGATCCTGGGCTCCTCGATTTTTCAAGGATCTACTCATTTGG
TGGTGTCTGTGGCGTTTTGCAAGATCATCTGAGGAACAGGAAAGCATCTAAAATTGACTG
AAAAGGATAACTGTAGCGGTTTTCACGGTGGAAGGAAACTATATTGGCACAGAGGCAGAT
GACTGGATAAAGTAGTTGGCTCAAAGAAGATGCACAGTCTGCTGTTTTTTTCTCTGAATG
AAGACTATTTAATGGAAGCTGTATTCATGTGGAGATCAAAGAAAACACTGGAGTGATAAA
CTACTGGGGTCCCCCCTCCCCTTTTCTTTAATGAAAAGCCTGAAGCAGTAATTTGAGCTC
AAATGCCTTCTAATTCCTTCGCAGCCTGCCTGTTCCATTAGGATTCTCCGCTAACACGGT
TTTTGCTGGGTGCCTGTGCCCTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGAACTGGCATGAACCTTCTAATTGTGAAGGCTGTCCAAATGCACTATTTTTTTCTCCT
GCTAGAGGAAGTTACATCCCGAGCAGTAGCTCAGCTCTCTGGTAAGTGTAACATGTGAGC
ATTACTAGGCATTTCATCCTGCAGTTCTGCAGTCTTTGCTCTTCAGACTGTTGCTCAGTT
GGAATGCTTCTGTGGGGCCGATCCTGGGCTCCTCGATTTTTCAAGGATCTACTCATTTGG
TGGTGTCTGTGGCGTTTTGCAAGATCATCTGAGGAACAGGAAAGCATCTAAAATTGACTG
AAAAGGATAACTGTAGCGGTTTTCACGGTGGAAGGAAACTATATTGGCACAGAGGCAGAT
GACTGGATAAAGTAGTTGGCTCAAAGAAGATGCACAGTCTGCTGTTTTTTTCTCTGAATG
AAGACTATTTAATGGAAGCTGTATTCATGTGGAGATCAAAGAAAACACTGGAGTGATAAA
CTACTGGGGTCCCCCCTCCCCTTTTCTTTAATGAAAAGCCTGAAGCAGTAATTTGAGCTC
AAATGCCTTCTAATTCCTTCGCAGCCTGCCTGTTCCATTAGGATTCTCCGCTAACACGGT
TTTTGCTGGGTGCCTGTGCCCTTT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               120-232, - strand, RNAz p=0.732244
               

               
               313-432, + strand, RNAz p=0.866348

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               120-232, - strand, RNAz p=0.732244
               

               
               313-432, + strand, RNAz p=0.866348

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               402-482, + strand, RNAmicro p=0.970864

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               402-482, + strand, RNAmicro p=0.970864

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-624, gnl|bosTau2|chr1 (99286754-99287382)
               

               
               1-624, gnl|Hg17|chr3 (15814582-15813949)
               

               
               1-624, gnl|Mm7|chr14 (29211450-29210830)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-624, gnl|bosTau2|chr1 (99286754-99287382)
               

               
               1-624, gnl|Hg17|chr3 (15814582-15813949)
               

               
               1-624, gnl|Mm7|chr14 (29211450-29210830)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eep (0.122564)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)

	120-232, - strand, RNAz p=0.732244
	313-432, + strand, RNAz p=0.866348

	1-624, gnl\|bosTau2\|chr1 (99286754-99287382)
	1-624, gnl\|Hg17\|chr3 (15814582-15813949)
	1-624, gnl\|Mm7\|chr14 (29211450-29210830)