Non-Coding RNA Search

Ss1.1-Ova1-OVRM10113C10.5

Sequence:


               
               AGCGTTCCGGCTGAGGCCCCGCGAGCGAGTCGAGGGACTCCTTGGCTGCGGTGATGGGGT
CGGTGGGCGTAGGGCTGGTGGACTGTCACTGTCACCTCTCCGCCCCGGATTTTGACCACG
ATCTGGATGATGTGTTGGAGAAAGCCAAGAAAGCCAGTGTTATGGCTCTTGTGGTGGTTG
CTGAACATTCAGGAGAATTTGAAAAGATTATGCAGCTTTCAGAAAGGTATAATGGATTTG
TCCTGCCATGCTTGGGTATTCACCCTGTTCAGGGAGTTTCATCAGAAGACCAAAGAAGTG
TCACATTAAAGGATTTGGATATAGCTTTGCCCATTATCGAGAATTATAAGGATCAATTGT
TGGCAATTGGAGAGGTTGGACTAGATTTCTCCCCCAGAATTGCTGGCACTGATGAACAGA
AGGAAGAGCAAAGACAAGTCCTAATCAGACAGGTCCAATTGGCCAGAAGACTCAATTTGC
CTTTAAACGTTCACTCACGCTCAGCTGGAAGACCCACCATCAGCCTCTTACGGGAGCAAG
GTGCCGACAAAGTGCTGCTGCATGCGTTTGACGGTCGGCCGTCTGTAGCCATGGAAGGTG
TAAGAGCTGGGTACTTCTTCTCAATTCCTCCTTCTATCATAAGAAGTGGACAGGTAAATT
CTTTCATTAAACTTCATTTTATACTTTGTGAAATAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCGTTCCGGCTGAGGCCCCGCGAGCGAGTCGAGGGACTCCTTGGCTGCGGTGATGGGGT
CGGTGGGCGTAGGGCTGGTGGACTGTCACTGTCACCTCTCCGCCCCGGATTTTGACCACG
ATCTGGATGATGTGTTGGAGAAAGCCAAGAAAGCCAGTGTTATGGCTCTTGTGGTGGTTG
CTGAACATTCAGGAGAATTTGAAAAGATTATGCAGCTTTCAGAAAGGTATAATGGATTTG
TCCTGCCATGCTTGGGTATTCACCCTGTTCAGGGAGTTTCATCAGAAGACCAAAGAAGTG
TCACATTAAAGGATTTGGATATAGCTTTGCCCATTATCGAGAATTATAAGGATCAATTGT
TGGCAATTGGAGAGGTTGGACTAGATTTCTCCCCCAGAATTGCTGGCACTGATGAACAGA
AGGAAGAGCAAAGACAAGTCCTAATCAGACAGGTCCAATTGGCCAGAAGACTCAATTTGC
CTTTAAACGTTCACTCACGCTCAGCTGGAAGACCCACCATCAGCCTCTTACGGGAGCAAG
GTGCCGACAAAGTGCTGCTGCATGCGTTTGACGGTCGGCCGTCTGTAGCCATGGAAGGTG
TAAGAGCTGGGTACTTCTTCTCAATTCCTCCTTCTATCATAAGAAGTGGACAGGTAAATT
CTTTCATTAAACTTCATTTTATACTTTGTGAAATAC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|55589294|ref|XP_514184.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|55589294|ref|XP_514184.1|

Aligned organism(s): 9 entry(ies)

More info

Aligned organism(s): 9 entry(ies)

Help | Less info


               
               1-120, gnl|bosTau2|chr16 (52833086-52832966)
               

               
               1-120, gnl|Hg17|chr1 (209353604-209353725)
               

               
               1-120, gnl|Mm7|chr1 (190616438-190616306)
               


               
               373-491, gnl|bosTau2|chr16 (52826698-52826580)
               

               
               373-491, gnl|Hg17|chr1 (209366055-209366173)
               

               
               373-491, gnl|Mm7|chr1 (190608879-190608761)
               


               
               539-691, gnl|bosTau2|chr16 (52825110-52824959)
               

               
               539-691, gnl|Hg17|chr1 (209369471-209369622)
               

               
               539-691, gnl|Mm7|chr1 (190606480-190606330)

Aligned organism(s): 9 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-120, gnl|bosTau2|chr16 (52833086-52832966)
               

               
               1-120, gnl|Hg17|chr1 (209353604-209353725)
               

               
               1-120, gnl|Mm7|chr1 (190616438-190616306)
               


               
               373-491, gnl|bosTau2|chr16 (52826698-52826580)
               

               
               373-491, gnl|Hg17|chr1 (209366055-209366173)
               

               
               373-491, gnl|Mm7|chr1 (190608879-190608761)
               


               
               539-691, gnl|bosTau2|chr16 (52825110-52824959)
               

               
               539-691, gnl|Hg17|chr1 (209369471-209369622)
               

               
               539-691, gnl|Mm7|chr1 (190606480-190606330)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               nlu (0.191681)
               

               
               pgl (0.118483)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nlu (0.191681)
               

               
               pgl (0.118483)

	1-120, gnl\|bosTau2\|chr16 (52833086-52832966)
	1-120, gnl\|Hg17\|chr1 (209353604-209353725)
	1-120, gnl\|Mm7\|chr1 (190616438-190616306)

	373-491, gnl\|bosTau2\|chr16 (52826698-52826580)
	373-491, gnl\|Hg17\|chr1 (209366055-209366173)
	373-491, gnl\|Mm7\|chr1 (190608879-190608761)

	539-691, gnl\|bosTau2\|chr16 (52825110-52824959)
	539-691, gnl\|Hg17\|chr1 (209369471-209369622)
	539-691, gnl\|Mm7\|chr1 (190606480-190606330)