Ss1.1-Ova1-OVRM10113F01.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTTGCTTCAGGGTCGCGGTAGGGAGAGCTTCGGACGTCGAGGGTGCGATTTTTGAGAGCC GACCGCAAGTGGGACCCGGCGAGGGATGGCGGCCACCCGGACCGCGGCCGCAGCTGCCAC GGGCAAATTCCTCCTCTTATTGCTGCTCGGGCTGTCGGCTCCCGCTGCGGCGCTGGCCGG CTACATTGAGGCTCTCGCAGCCAATGCTGGAACAGGGTTTGCCGTCGCTGAGCCTCAGAT CGCCATGTTCTGTGGGAAGTTAAATATGCATGTGAACATTCAGACTGGGAAGTGGGAGCC TGACCCAACAGGCACAAAGAGCTGCTTCGGCACAAAAGAAGAGGTTCTCCAGTACTGTCA GGAGATGTATCCAGAGCTACAGATCACAAACGTGATGGAAGCAAACCAGCCAGTCAGGGT GGACAATTGGTGCCGGAGGGACAAGAAGCAGTGCAAGAGTCACGTTGTGATCCCCTCCAA GTGTCTCGTGGGTGAGTTTGTAAGTGACGTTCTGCTAGTTCCAGAAAAGTGCCAGTTTTT CCACAAGGAGCGGATGGAGGTGTGCGAGAATCACCAGCACTGGCACACGGTGGTCAAAGA GGCCTGCCTGACTCAGGGAATGACCTTGTACAGCTACGGCATGCTGCTCCCCTGTGGGGT GGACCAGTTCCACGGCACCGAGTATGTATGCTGCCCTCAGACAAAGCTTGTTAGATCTTC TGTGTCAAAAGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTTGCTTCAGGGTCGCGGTAGGGAGAGCTTCGGACGTCGAGGGTGCGATTTTTGAGAGCC GACCGCAAGTGGGACCCGGCGAGGGATGGCGGCCACCCGGACCGCGGCCGCAGCTGCCAC GGGCAAATTCCTCCTCTTATTGCTGCTCGGGCTGTCGGCTCCCGCTGCGGCGCTGGCCGG CTACATTGAGGCTCTCGCAGCCAATGCTGGAACAGGGTTTGCCGTCGCTGAGCCTCAGAT CGCCATGTTCTGTGGGAAGTTAAATATGCATGTGAACATTCAGACTGGGAAGTGGGAGCC TGACCCAACAGGCACAAAGAGCTGCTTCGGCACAAAAGAAGAGGTTCTCCAGTACTGTCA GGAGATGTATCCAGAGCTACAGATCACAAACGTGATGGAAGCAAACCAGCCAGTCAGGGT GGACAATTGGTGCCGGAGGGACAAGAAGCAGTGCAAGAGTCACGTTGTGATCCCCTCCAA GTGTCTCGTGGGTGAGTTTGTAAGTGACGTTCTGCTAGTTCCAGAAAAGTGCCAGTTTTT CCACAAGGAGCGGATGGAGGTGTGCGAGAATCACCAGCACTGGCACACGGTGGTCAAAGA GGCCTGCCTGACTCAGGGAATGACCTTGTACAGCTACGGCATGCTGCTCCCCTGTGGGGT GGACCAGTTCCACGGCACCGAGTATGTATGCTGCCCTCAGACAAAGCTTGTTAGATCTTC TGTGTCAAAAGA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 488-602, + strand, RNAz p=0.63923 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 488-602, + strand, RNAz p=0.63923 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 189-367, gnl|bosTau2|chr29 (29361584-29361762) | |
| 189-367, gnl|Hg17|chr11 (129484532-129484710) | |
| 189-367, gnl|Mm7|chr9 (31077754-31077576) | |
| 488-602, gnl|bosTau2|chr29 (29367751-29367865) | |
| 488-602, gnl|canFam2|chr5 (7731280-7731148) | |
| 488-602, gnl|danRer3|chrNA (181077902-181077777) | |
| 488-602, gnl|dasNov1|scaffold_2494 (37826-37952) | |
| 488-602, gnl|echTel1|scaffold_294121 (7605-7471) | |
| 488-602, gnl|fr1|chrUn (65985793-65985664) | |
| 488-602, gnl|galGal2|chr24 (1443700-1443569) | |
| 488-602, gnl|hg17|chr11 (129495799-129495933) | |
| 488-602, gnl|Hg17|chr11 (129495810-129495924) | |
| 488-602, gnl|loxAfr1|scaffold_591 (87526-87654) | |
| 488-602, gnl|mm7|chr9 (31071734-31071600) | |
| 488-602, gnl|Mm7|chr9 (31071721-31071607) | |
| 488-602, gnl|monDom2|scaffold_15 (19049655-19049783) | |
| 488-602, gnl|oryCun1|scaffold_178307 (34760-34626) | |
| 488-602, gnl|panTro1|chr9_random (8433857-8433723) | |
| 488-602, gnl|rheMac2|chr14 (128184189-128184323) | |
| 488-602, gnl|rn3|chr8_random (310730-310596) | |
| 488-602, gnl|tetNig1|chr16 (5155158-5155025) | |
| 488-602, gnl|xenTro1|scaffold_1314 (72820-72949) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 189-367, gnl|bosTau2|chr29 (29361584-29361762) | |
| 189-367, gnl|Hg17|chr11 (129484532-129484710) | |
| 189-367, gnl|Mm7|chr9 (31077754-31077576) | |
| 488-602, gnl|bosTau2|chr29 (29367751-29367865) | |
| 488-602, gnl|canFam2|chr5 (7731280-7731148) | |
| 488-602, gnl|danRer3|chrNA (181077902-181077777) | |
| 488-602, gnl|dasNov1|scaffold_2494 (37826-37952) | |
| 488-602, gnl|echTel1|scaffold_294121 (7605-7471) | |
| 488-602, gnl|fr1|chrUn (65985793-65985664) | |
| 488-602, gnl|galGal2|chr24 (1443700-1443569) | |
| 488-602, gnl|hg17|chr11 (129495799-129495933) | |
| 488-602, gnl|Hg17|chr11 (129495810-129495924) | |
| 488-602, gnl|loxAfr1|scaffold_591 (87526-87654) | |
| 488-602, gnl|mm7|chr9 (31071734-31071600) | |
| 488-602, gnl|Mm7|chr9 (31071721-31071607) | |
| 488-602, gnl|monDom2|scaffold_15 (19049655-19049783) | |
| 488-602, gnl|oryCun1|scaffold_178307 (34760-34626) | |
| 488-602, gnl|panTro1|chr9_random (8433857-8433723) | |
| 488-602, gnl|rheMac2|chr14 (128184189-128184323) | |
| 488-602, gnl|rn3|chr8_random (310730-310596) | |
| 488-602, gnl|tetNig1|chr16 (5155158-5155025) | |
| 488-602, gnl|xenTro1|scaffold_1314 (72820-72949) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cje (0.165235) |