Non-Coding RNA Search

Ss1.1-Ova1-OVRM10113F07.5

Sequence:


               
               AGCGCCGAGGCTGGGAGCTTCGAGACGTTGGTTTTTAAAGCGACCACTGCCTCCCCGAGA
GCGGCTCTGCGCCCGCAGGCCCCCGCCACCGGCACTTTGCACCCACCTACTCCTTGGCGG
GTAGGGGGCAGAAAAGTTTTGAGGCGCTCTCATCGCAGCCTCCGGGGTGGTTGAACTGGT
TTTTGTTTTGTGTGGCCGAAGCCAAAAATCCCAGTGCCCAAGAACCGGGGAATGATGTTT
AGGGGTCTAAAACGGGTCGGTGCTAGGCTTCGACTCCTTGTTCTGCGACACTAGAGTCCG
CGCTGGAAGGATAGAGCAAGACCCTCGGAGTTGCATCACCTCTGGAAGAAACTCCGTAGC
ATGATGCTGATTTGCATGTTCTCTGCCCCCATCTCGGCGATCTTCTTCAGGCGCGCATCC
ATTGACTGAGCCGCGTCTCTCGGCACCCCCAGCATTTCCCAGAGTGCAACAACACCACCC
GAGATCAATGACCAGTCTGTTTATTCTTGACGCGCCGGGAAGAGCAAGGCACTGAAGGAG
CATGGGAGGAAGACTTGGGGCTTGCCTCTTGGCGACCTCTCGCAGACTTTTTCTAGCTGG
ATTTCTAAACGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCGCCGAGGCTGGGAGCTTCGAGACGTTGGTTTTTAAAGCGACCACTGCCTCCCCGAGA
GCGGCTCTGCGCCCGCAGGCCCCCGCCACCGGCACTTTGCACCCACCTACTCCTTGGCGG
GTAGGGGGCAGAAAAGTTTTGAGGCGCTCTCATCGCAGCCTCCGGGGTGGTTGAACTGGT
TTTTGTTTTGTGTGGCCGAAGCCAAAAATCCCAGTGCCCAAGAACCGGGGAATGATGTTT
AGGGGTCTAAAACGGGTCGGTGCTAGGCTTCGACTCCTTGTTCTGCGACACTAGAGTCCG
CGCTGGAAGGATAGAGCAAGACCCTCGGAGTTGCATCACCTCTGGAAGAAACTCCGTAGC
ATGATGCTGATTTGCATGTTCTCTGCCCCCATCTCGGCGATCTTCTTCAGGCGCGCATCC
ATTGACTGAGCCGCGTCTCTCGGCACCCCCAGCATTTCCCAGAGTGCAACAACACCACCC
GAGATCAATGACCAGTCTGTTTATTCTTGACGCGCCGGGAAGAGCAAGGCACTGAAGGAG
CATGGGAGGAAGACTTGGGGCTTGCCTCTTGGCGACCTCTCGCAGACTTTTTCTAGCTGG
ATTTCTAAACGG

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

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               1-359, gnl|bosTau2|chr5 (52757739-52758114)
               

               
               1-359, gnl|canFam2|chr27 (25873814-25873478)
               

               
               1-359, gnl|dasNov1|scaffold_565 (71884-71559)
               

               
               1-359, gnl|echTel1|scaffold_301453 (13159-12804)
               

               
               1-359, gnl|hg17|chr12 (24607373-24607776)
               

               
               1-359, gnl|Hg17|chr12 (24607469-24607911)
               

               
               1-359, gnl|loxAfr1|scaffold_7715 (45952-45621)
               

               
               1-359, gnl|mm7|chr6 (144873521-144873857)
               

               
               1-359, gnl|Mm7|chr6 (144873611-144873952)
               

               
               1-359, gnl|monDom2|scaffold_31 (1130891-1130383)
               

               
               1-359, gnl|panTro1|chrUn_random (51005966-51006338)
               

               
               1-359, gnl|rn3|chr4 (182655997-182656384)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-359, gnl|bosTau2|chr5 (52757739-52758114)
               

               
               1-359, gnl|canFam2|chr27 (25873814-25873478)
               

               
               1-359, gnl|dasNov1|scaffold_565 (71884-71559)
               

               
               1-359, gnl|echTel1|scaffold_301453 (13159-12804)
               

               
               1-359, gnl|hg17|chr12 (24607373-24607776)
               

               
               1-359, gnl|Hg17|chr12 (24607469-24607911)
               

               
               1-359, gnl|loxAfr1|scaffold_7715 (45952-45621)
               

               
               1-359, gnl|mm7|chr6 (144873521-144873857)
               

               
               1-359, gnl|Mm7|chr6 (144873611-144873952)
               

               
               1-359, gnl|monDom2|scaffold_31 (1130891-1130383)
               

               
               1-359, gnl|panTro1|chrUn_random (51005966-51006338)
               

               
               1-359, gnl|rn3|chr4 (182655997-182656384)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               gul (0.177588)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               gul (0.177588)

	1-359, gnl\|bosTau2\|chr5 (52757739-52758114)
	1-359, gnl\|canFam2\|chr27 (25873814-25873478)
	1-359, gnl\|dasNov1\|scaffold_565 (71884-71559)
	1-359, gnl\|echTel1\|scaffold_301453 (13159-12804)
	1-359, gnl\|hg17\|chr12 (24607373-24607776)
	1-359, gnl\|Hg17\|chr12 (24607469-24607911)
	1-359, gnl\|loxAfr1\|scaffold_7715 (45952-45621)
	1-359, gnl\|mm7\|chr6 (144873521-144873857)
	1-359, gnl\|Mm7\|chr6 (144873611-144873952)
	1-359, gnl\|monDom2\|scaffold_31 (1130891-1130383)
	1-359, gnl\|panTro1\|chrUn_random (51005966-51006338)
	1-359, gnl\|rn3\|chr4 (182655997-182656384)