Ss1.1-Ova1-OVRM10114F06.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCTCTTTCCCCTCCCTCCAGTCCTACGCAACCTGAGAGCCCCGCTGGGAGGAGCCTCCGA GACGCCCTCGGGGGAGCTATCCCGGCGGGCCCCGCGCGCGGCCGCGTTTGAATGGCCCTG AGTGGGACTCGGCCGGGAGCCGAGAGATAGTCCGGGCGCAGTCGGCTGGCGCCGGGGCTG CGCGGAGGCGCCGCGGTACCATGAGGCGCCGGTATTTAAGAGATTATGGCCTCTGAAACC CACAATGTTAAAAAATGCAACTCTTGTAATAATATTGAGGATCATTCCATTGATCTTCCT AGAAAAAGGATCTCTAATTTCACTAATAAGAACATGAAGGAGGTTAAGAAATCTCCAAAA CAGTTGGCTGCTTACATAACTAGAACAGTTGGTCAAGCTGTGAAAAGCCCAGATAAACTA CGTAAGGTGATCTATCGCAGAAAGAAAGTTCATCATCCTTTTCCAAACCCTTGTTACAGA AGAAAACAGTCCCCTAGAAGTGGGGGCTGTGACATGGCAAATAAAGAAAATGAACTGGCT TGTGCAGGCCACCTCCCTGAAAAATTACGCCATGATAGTCGAACATATTCGGTTAACTCC AGTGATTCTAGTTCGTCACAGACAGAAAGCCCATCATCAAAATATAGTGGGTTTTTTTCT GAGGTTTCTCAGGACCATGAAACAATGGCCCAAGTTTTGTTCAGCAGGAATTTGAGATTG AATGTAGCTTTAACTTTTTGGAGAAAGAGAAGTATAAGTGAACTTGTAGCTTATTTGGTG AGGATAGAAGACCTTGGAGTTGTGGTGGATTGCCTTCCTGTGCTCACCAATAGTTTACAG GAAGAAAAACAATATATCTCACTTGGCTGCTGTGTAGACTTGTTGCCTCTAGTAAAGTCA CTACTTAAGAGCAAATTTGAAGAATACGTAATAGTTGGTTTAAACTGGCTTCAAGCAGTC ATTAAAAGGTGGTGGTCAGAACTATCATCCAAGACAGAAATTATAAATGATGGAAATATT CAGATTTTAAAACAACAATTAAGTGGATTATGGGAACAGGAAAACCATCTTACTTTGGTT CCGGGATATACTGGTAATATAGCCAAGGATGTAGATGCTTATTTATTACAGTTGCATTGA GAACCTTCATCTACTAAATAGCATTTGGTCATTCAAAACATCCCTGGACATTCCCCAAAA ATGCTTCATCTGAGAACTGTGAACTGTGGAAGAAAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCTCTTTCCCCTCCCTCCAGTCCTACGCAACCTGAGAGCCCCGCTGGGAGGAGCCTCCGA GACGCCCTCGGGGGAGCTATCCCGGCGGGCCCCGCGCGCGGCCGCGTTTGAATGGCCCTG AGTGGGACTCGGCCGGGAGCCGAGAGATAGTCCGGGCGCAGTCGGCTGGCGCCGGGGCTG CGCGGAGGCGCCGCGGTACCATGAGGCGCCGGTATTTAAGAGATTATGGCCTCTGAAACC CACAATGTTAAAAAATGCAACTCTTGTAATAATATTGAGGATCATTCCATTGATCTTCCT AGAAAAAGGATCTCTAATTTCACTAATAAGAACATGAAGGAGGTTAAGAAATCTCCAAAA CAGTTGGCTGCTTACATAACTAGAACAGTTGGTCAAGCTGTGAAAAGCCCAGATAAACTA CGTAAGGTGATCTATCGCAGAAAGAAAGTTCATCATCCTTTTCCAAACCCTTGTTACAGA AGAAAACAGTCCCCTAGAAGTGGGGGCTGTGACATGGCAAATAAAGAAAATGAACTGGCT TGTGCAGGCCACCTCCCTGAAAAATTACGCCATGATAGTCGAACATATTCGGTTAACTCC AGTGATTCTAGTTCGTCACAGACAGAAAGCCCATCATCAAAATATAGTGGGTTTTTTTCT GAGGTTTCTCAGGACCATGAAACAATGGCCCAAGTTTTGTTCAGCAGGAATTTGAGATTG AATGTAGCTTTAACTTTTTGGAGAAAGAGAAGTATAAGTGAACTTGTAGCTTATTTGGTG AGGATAGAAGACCTTGGAGTTGTGGTGGATTGCCTTCCTGTGCTCACCAATAGTTTACAG GAAGAAAAACAATATATCTCACTTGGCTGCTGTGTAGACTTGTTGCCTCTAGTAAAGTCA CTACTTAAGAGCAAATTTGAAGAATACGTAATAGTTGGTTTAAACTGGCTTCAAGCAGTC ATTAAAAGGTGGTGGTCAGAACTATCATCCAAGACAGAAATTATAAATGATGGAAATATT CAGATTTTAAAACAACAATTAAGTGGATTATGGGAACAGGAAAACCATCTTACTTTGGTT CCGGGATATACTGGTAATATAGCCAAGGATGTAGATGCTTATTTATTACAGTTGCATTGA GAACCTTCATCTACTAAATAGCATTTGGTCATTCAAAACATCCCTGGACATTCCCCAAAA ATGCTTCATCTGAGAACTGTGAACTGTGGAAGAAAT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 421-580, + strand, RNAz p=0.918136 | |
| 461-617, - strand, RNAz p=0.829471 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 421-580, + strand, RNAz p=0.918136 | |
| 461-617, - strand, RNAz p=0.829471 |
| Aligned organism(s): 60 entry(ies) | More info |
| Aligned organism(s): 60 entry(ies) | Help | Less info |
| 211-344, gnl|bosTau2|chr10 (17411716-17411849) | |
| 211-344, gnl|canFam2|chr30 (3900884-3900722) | |
| 211-344, gnl|dasNov1|scaffold_13587 (43649-43811) | |
| 211-344, gnl|echTel1|scaffold_4448 (3730-3597) | |
| 211-344, gnl|galGal2|chr5 (26913470-26913309) | |
| 211-344, gnl|hg17|chr15 (32243025-32243187) | |
| 211-344, gnl|Hg17|chr15 (32243184-32243051) | |
| 211-344, gnl|loxAfr1|scaffold_347 (96135-95973) | |
| 211-344, gnl|mm7|chr2 (112254523-112254397) | |
| 211-344, gnl|Mm7|chr2 (112254398-112254516) | |
| 211-344, gnl|monDom2|scaffold_12 (11988767-11988929) | |
| 211-344, gnl|oryCun1|scaffold_141453 (1617-1456) | |
| 211-344, gnl|panTro1|chr16 (31879704-31879866) | |
| 211-344, gnl|rheMac2|chr7 (12409305-12409467) | |
| 211-344, gnl|rn3|chr3 (98153709-98153583) | |
| 382-665, gnl|bosTau2|chr10 (17414180-17414463) | |
| 382-665, gnl|canFam2|chr30 (3903842-3903557) | |
| 382-665, gnl|danRer3|chr20 (37167174-37167453) | |
| 382-665, gnl|dasNov1|scaffold_13587 (40906-41191) | |
| 382-665, gnl|echTel1|scaffold_4448 (4051-3770) | |
| 382-665, gnl|galGal2|chr5 (26914927-26914642) | |
| 382-665, gnl|hg17|chr15 (32232282-32232567) | |
| 382-665, gnl|Hg17|chr15 (32232564-32232281) | |
| 382-665, gnl|loxAfr1|scaffold_347 (98727-98442) | |
| 382-665, gnl|mm7|chr2 (112256594-112256309) | |
| 382-665, gnl|Mm7|chr2 (112256310-112256593) | |
| 382-665, gnl|monDom2|scaffold_12 (11987256-11987541) | |
| 382-665, gnl|oryCun1|scaffold_141453 (3971-3686) | |
| 382-665, gnl|panTro1|chr16 (31868947-31869232) | |
| 382-665, gnl|rheMac2|chr7 (12398252-12398537) | |
| 382-665, gnl|rn3|chr3 (98155856-98155571) | |
| 382-665, gnl|xenTro1|scaffold_7 (95025-94740) | |
| 815-963, gnl|bosTau2|chr23 (25869517-25869657) | |
| 815-963, gnl|canFam2|chr35 (26255946-26256075) | |
| 815-963, gnl|dasNov1|scaffold_42855 (3557-3686) | |
| 815-963, gnl|echTel1|scaffold_4448 (4217-4337) | |
| 815-963, gnl|hg17|chr6 (25356709-25356837) | |
| 815-963, gnl|Hg17|chr6 (25356692-25356838) | |
| 815-963, gnl|loxAfr1|scaffold_347 (102430-102553) | |
| 815-963, gnl|mm7|chr2 (112258760-112258881) | |
| 815-963, gnl|monDom2|scaffold_12 (11985860-11985733) | |
| 815-963, gnl|oryCun1|scaffold_197482 (8098-8228) | |
| 815-963, gnl|panTro1|chr5 (25820280-25820408) | |
| 815-963, gnl|rheMac2|chr4 (25244744-25244868) | |
| 815-963, gnl|rn3|chr3 (98157825-98157930) | |
| 1105-1236, gnl|bosTau2|chr10 (17422441-17422574) | |
| 1105-1236, gnl|canFam2|chr30 (3914250-3913932) | |
| 1105-1236, gnl|dasNov1|scaffold_13587 (31396-31718) | |
| 1105-1236, gnl|echTel1|scaffold_276233 (2924-2620) | |
| 1105-1236, gnl|galGal2|chr5 (26920135-26919845) | |
| 1105-1236, gnl|hg17|chr15 (32221580-32221903) | |
| 1105-1236, gnl|Hg17|chr15 (32221867-32221726) | |
| 1105-1236, gnl|loxAfr1|scaffold_64731 (9977-9715) | |
| 1105-1236, gnl|mm7|chr2 (112262899-112262588) | |
| 1105-1236, gnl|Mm7|chr2 (112262618-112262752) | |
| 1105-1236, gnl|monDom2|scaffold_12 (11981066-11981380) | |
| 1105-1236, gnl|oryCun1|scaffold_141453 (13003-12698) | |
| 1105-1236, gnl|panTro1|chr16 (31858264-31858586) | |
| 1105-1236, gnl|rheMac2|chr7 (12387059-12387379) | |
| 1105-1236, gnl|rn3|chr3 (98162627-98162312) |
| Aligned organism(s): 60 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 211-344, gnl|bosTau2|chr10 (17411716-17411849) | |
| 211-344, gnl|canFam2|chr30 (3900884-3900722) | |
| 211-344, gnl|dasNov1|scaffold_13587 (43649-43811) | |
| 211-344, gnl|echTel1|scaffold_4448 (3730-3597) | |
| 211-344, gnl|galGal2|chr5 (26913470-26913309) | |
| 211-344, gnl|hg17|chr15 (32243025-32243187) | |
| 211-344, gnl|Hg17|chr15 (32243184-32243051) | |
| 211-344, gnl|loxAfr1|scaffold_347 (96135-95973) | |
| 211-344, gnl|mm7|chr2 (112254523-112254397) | |
| 211-344, gnl|Mm7|chr2 (112254398-112254516) | |
| 211-344, gnl|monDom2|scaffold_12 (11988767-11988929) | |
| 211-344, gnl|oryCun1|scaffold_141453 (1617-1456) | |
| 211-344, gnl|panTro1|chr16 (31879704-31879866) | |
| 211-344, gnl|rheMac2|chr7 (12409305-12409467) | |
| 211-344, gnl|rn3|chr3 (98153709-98153583) | |
| 382-665, gnl|bosTau2|chr10 (17414180-17414463) | |
| 382-665, gnl|canFam2|chr30 (3903842-3903557) | |
| 382-665, gnl|danRer3|chr20 (37167174-37167453) | |
| 382-665, gnl|dasNov1|scaffold_13587 (40906-41191) | |
| 382-665, gnl|echTel1|scaffold_4448 (4051-3770) | |
| 382-665, gnl|galGal2|chr5 (26914927-26914642) | |
| 382-665, gnl|hg17|chr15 (32232282-32232567) | |
| 382-665, gnl|Hg17|chr15 (32232564-32232281) | |
| 382-665, gnl|loxAfr1|scaffold_347 (98727-98442) | |
| 382-665, gnl|mm7|chr2 (112256594-112256309) | |
| 382-665, gnl|Mm7|chr2 (112256310-112256593) | |
| 382-665, gnl|monDom2|scaffold_12 (11987256-11987541) | |
| 382-665, gnl|oryCun1|scaffold_141453 (3971-3686) | |
| 382-665, gnl|panTro1|chr16 (31868947-31869232) | |
| 382-665, gnl|rheMac2|chr7 (12398252-12398537) | |
| 382-665, gnl|rn3|chr3 (98155856-98155571) | |
| 382-665, gnl|xenTro1|scaffold_7 (95025-94740) | |
| 815-963, gnl|bosTau2|chr23 (25869517-25869657) | |
| 815-963, gnl|canFam2|chr35 (26255946-26256075) | |
| 815-963, gnl|dasNov1|scaffold_42855 (3557-3686) | |
| 815-963, gnl|echTel1|scaffold_4448 (4217-4337) | |
| 815-963, gnl|hg17|chr6 (25356709-25356837) | |
| 815-963, gnl|Hg17|chr6 (25356692-25356838) | |
| 815-963, gnl|loxAfr1|scaffold_347 (102430-102553) | |
| 815-963, gnl|mm7|chr2 (112258760-112258881) | |
| 815-963, gnl|monDom2|scaffold_12 (11985860-11985733) | |
| 815-963, gnl|oryCun1|scaffold_197482 (8098-8228) | |
| 815-963, gnl|panTro1|chr5 (25820280-25820408) | |
| 815-963, gnl|rheMac2|chr4 (25244744-25244868) | |
| 815-963, gnl|rn3|chr3 (98157825-98157930) | |
| 1105-1236, gnl|bosTau2|chr10 (17422441-17422574) | |
| 1105-1236, gnl|canFam2|chr30 (3914250-3913932) | |
| 1105-1236, gnl|dasNov1|scaffold_13587 (31396-31718) | |
| 1105-1236, gnl|echTel1|scaffold_276233 (2924-2620) | |
| 1105-1236, gnl|galGal2|chr5 (26920135-26919845) | |
| 1105-1236, gnl|hg17|chr15 (32221580-32221903) | |
| 1105-1236, gnl|Hg17|chr15 (32221867-32221726) | |
| 1105-1236, gnl|loxAfr1|scaffold_64731 (9977-9715) | |
| 1105-1236, gnl|mm7|chr2 (112262899-112262588) | |
| 1105-1236, gnl|Mm7|chr2 (112262618-112262752) | |
| 1105-1236, gnl|monDom2|scaffold_12 (11981066-11981380) | |
| 1105-1236, gnl|oryCun1|scaffold_141453 (13003-12698) | |
| 1105-1236, gnl|panTro1|chr16 (31858264-31858586) | |
| 1105-1236, gnl|rheMac2|chr7 (12387059-12387379) | |
| 1105-1236, gnl|rn3|chr3 (98162627-98162312) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| kid (0.129735) | |
| ebs (0.118301) |