Non-Coding RNA Search

Ss1.1-Ova1-OVRM10115B08.5

Sequence:


               
               ACAGACTCTCTGGAGAGCCTTGGAGCAGAATTCCCGAAGATTCCCACATCATCGATGAAA
GCAAAGCCAAGCCACCCAGCCGTCAGCATGTCCACCTCGCTGCGCGTGAGCCCGTCCATC
CGCGGCTACCACTTCGACACGGCCTCCCGCAAGAAAGCCGTGGGCAACATCTTTGAAAAC
ATAGACCAAGAAGCGCTCCAGAGGCTCTTCAAAAACTCGGGGGACAAGAAAGCAGAGGAG
AGAGCGAAGATCATTTTCGCCATCGATCAGGATCTGGAGGAGAAAACGCGAGCCCTGATG
GCCCTGAAGAAGAGGACGAAAGACAAGCTCTTCCAGTTTCTGAAACTGGAGAAATATTCC
ATCAAAGTTCACTGAGGACCAGGAGATGGATAAGGACCTTATCCAAGAACGGACGTTTAA
AGAGCACCTGAGTCCGCGAGACCCTAATACACACACAGCATCTCGCGGTTGCTGCCTTGC
AAGTTTCTCTTGCACCAGGACCTGAGGACTCTGAGGCAGGAAAGGAGCAGATGAACTGGT
TACAAAGACTCCAATCAACTTCACGTCTGTGCTGTGATAGCCGCTGTGACAGCGGAGACA
GAAATGCTTGCAGCCGGCACTGGAAAATTCTCCCCCGGGGAAAGGACTGATGCTCACGTT
GGGAGAAAAGTCTGGACAGATGTAATTGTAATGAGAATTCAATATAACAGAAGGCTGGAG
AAGAATTGCAGCCAGGGTCTTAGAGTCAGACCCTAGGACTTAAACTCAACCCGAACTTTT
TTTTTTTTTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACAGACTCTCTGGAGAGCCTTGGAGCAGAATTCCCGAAGATTCCCACATCATCGATGAAA
GCAAAGCCAAGCCACCCAGCCGTCAGCATGTCCACCTCGCTGCGCGTGAGCCCGTCCATC
CGCGGCTACCACTTCGACACGGCCTCCCGCAAGAAAGCCGTGGGCAACATCTTTGAAAAC
ATAGACCAAGAAGCGCTCCAGAGGCTCTTCAAAAACTCGGGGGACAAGAAAGCAGAGGAG
AGAGCGAAGATCATTTTCGCCATCGATCAGGATCTGGAGGAGAAAACGCGAGCCCTGATG
GCCCTGAAGAAGAGGACGAAAGACAAGCTCTTCCAGTTTCTGAAACTGGAGAAATATTCC
ATCAAAGTTCACTGAGGACCAGGAGATGGATAAGGACCTTATCCAAGAACGGACGTTTAA
AGAGCACCTGAGTCCGCGAGACCCTAATACACACACAGCATCTCGCGGTTGCTGCCTTGC
AAGTTTCTCTTGCACCAGGACCTGAGGACTCTGAGGCAGGAAAGGAGCAGATGAACTGGT
TACAAAGACTCCAATCAACTTCACGTCTGTGCTGTGATAGCCGCTGTGACAGCGGAGACA
GAAATGCTTGCAGCCGGCACTGGAAAATTCTCCCCCGGGGAAAGGACTGATGCTCACGTT
GGGAGAAAAGTCTGGACAGATGTAATTGTAATGAGAATTCAATATAACAGAAGGCTGGAG
AAGAATTGCAGCCAGGGTCTTAGAGTCAGACCCTAGGACTTAAACTCAACCCGAACTTTT
TTTTTTTTTTTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|59858467|gb|AAX09068.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|59858467|gb|AAX09068.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-784, gnl|bosTau2|chr27 (23131370-23132119)
               

               
               1-784, gnl|Hg17|chr8 (40130158-40130936)
               

               
               1-784, gnl|Mm7|chr8 (23224878-23224090)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-784, gnl|bosTau2|chr27 (23131370-23132119)
               

               
               1-784, gnl|Hg17|chr8 (40130158-40130936)
               

               
               1-784, gnl|Mm7|chr8 (23224878-23224090)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               pla (0.66836)
               

               
               nmm (0.265604)
               

               
               nlu (0.191681)
               

               
               fhi (0.169578)
               

               
               che (0.136314)
               

               
               bla (0.124347)
               

               
               eep (0.122564)

Expressed library(ies): 7 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.66836)
               

               
               nmm (0.265604)
               

               
               nlu (0.191681)
               

               
               fhi (0.169578)
               

               
               che (0.136314)
               

               
               bla (0.124347)
               

               
               eep (0.122564)

	1-784, gnl\|bosTau2\|chr27 (23131370-23132119)
	1-784, gnl\|Hg17\|chr8 (40130158-40130936)
	1-784, gnl\|Mm7\|chr8 (23224878-23224090)

	pla (0.66836)
	nmm (0.265604)
	nlu (0.191681)
	fhi (0.169578)
	che (0.136314)
	bla (0.124347)
	eep (0.122564)