Ss1.1-Ova1-OVRM10115E12.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTGGCCTACTGGAAAAAGATAGAAGATCTTACAGAGATTTTGGATCGTTATGTTCAGGAG CAAATTCCTGGTGCCAAGGTTGTGGTGGAGTCCATCGGTGCTCGCCGGCATGGCGATGCT TTTTCTCTAGAAGATTACACTAAGTGTGACTTGACTGTCTATGCAATTGACCCCCAAACG AACAGAGCCGTTGACAGAAATGAGCTTTTTAAATTTTTGGATGGCAAACTACTCGATATC AATAAAGACTTTCAGCCGTATTATGGAGAAGGAGGACGCATCTTGGAGATCCGGACTCCA GAGGCAGTGACCAGCATTAAAAAGCGAGGAGAAAGTCTAGGCTATACAGAAGGGGCCTTG CTGGCTCTGGCTTTTATCATCATCCTCTGCTGTATTCCAGCCATCTTGGTGGTTTTGGTC AGCTACAGACAGTTTAAAGTACGCCAAGCTGAGTGCACCAAGACAGCGCGCATCCAGTCC GCCCTGCCTGCAGCTAAACCAGCAGCGCCTGCCCCGGCACCAGTGGCAATGCCTCCACCA CCCCCGCCTCCTCCGGGTGCACATCTCTATGAAGAACTTGGGGATAGCACAATGAGTTAT CCATGGAGTCTGGAATTGATCCTGGCCAGGAATATGGACAAGATTATTACAGTTATGAGC ATGGGTATGAAATGCCTCAATATGGAAGTCGCCTGTCGTTTGTTACCACCAGCTGGACAA GAGGAATATGGTGAGGTGGTTGGTGAAGCTGAGGAGGAATATGAGGAGGAAGAGTGGGCA AGAAAAAGAATGATCAAATTAGTTGTCGATCGAGAGTATGAGACTAGCTCAACTGGAGAA GACAGCGCTCCT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTGGCCTACTGGAAAAAGATAGAAGATCTTACAGAGATTTTGGATCGTTATGTTCAGGAG CAAATTCCTGGTGCCAAGGTTGTGGTGGAGTCCATCGGTGCTCGCCGGCATGGCGATGCT TTTTCTCTAGAAGATTACACTAAGTGTGACTTGACTGTCTATGCAATTGACCCCCAAACG AACAGAGCCGTTGACAGAAATGAGCTTTTTAAATTTTTGGATGGCAAACTACTCGATATC AATAAAGACTTTCAGCCGTATTATGGAGAAGGAGGACGCATCTTGGAGATCCGGACTCCA GAGGCAGTGACCAGCATTAAAAAGCGAGGAGAAAGTCTAGGCTATACAGAAGGGGCCTTG CTGGCTCTGGCTTTTATCATCATCCTCTGCTGTATTCCAGCCATCTTGGTGGTTTTGGTC AGCTACAGACAGTTTAAAGTACGCCAAGCTGAGTGCACCAAGACAGCGCGCATCCAGTCC GCCCTGCCTGCAGCTAAACCAGCAGCGCCTGCCCCGGCACCAGTGGCAATGCCTCCACCA CCCCCGCCTCCTCCGGGTGCACATCTCTATGAAGAACTTGGGGATAGCACAATGAGTTAT CCATGGAGTCTGGAATTGATCCTGGCCAGGAATATGGACAAGATTATTACAGTTATGAGC ATGGGTATGAAATGCCTCAATATGGAAGTCGCCTGTCGTTTGTTACCACCAGCTGGACAA GAGGAATATGGTGAGGTGGTTGGTGAAGCTGAGGAGGAATATGAGGAGGAAGAGTGGGCA AGAAAAAGAATGATCAAATTAGTTGTCGATCGAGAGTATGAGACTAGCTCAACTGGAGAA GACAGCGCTCCT |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 664-774, + strand, RNAz p=0.73644 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 664-774, + strand, RNAz p=0.73644 |
| Aligned organism(s): 42 entry(ies) | More info |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
| 29-212, gnl|bosTau2|chr26 (3829252-3829434) | |
| 29-212, gnl|canFam2|chr26 (37623810-37623587) | |
| 29-212, gnl|danRer3|chr12 (3855565-3855343) | |
| 29-212, gnl|dasNov1|scaffold_4838 (60215-60438) | |
| 29-212, gnl|echTel1|scaffold_22198 (1604-1404) | |
| 29-212, gnl|fr1|chrUn (9096226-9096450) | |
| 29-212, gnl|galGal2|chr6 (5966476-5966252) | |
| 29-212, gnl|hg17|chr10 (55270069-55270293) | |
| 29-212, gnl|Hg17|chr10 (55270268-55270086) | |
| 29-212, gnl|mm7|chr10 (74277045-74276821) | |
| 29-212, gnl|Mm7|chr10 (74276844-74277026) | |
| 29-212, gnl|monDom2|scaffold_62 (6253854-6253619) | |
| 29-212, gnl|oryCun1|scaffold_212097 (109452-109676) | |
| 29-212, gnl|panTro1|chr8 (56181259-56181483) | |
| 29-212, gnl|rheMac2|chr9 (83489315-83489093) | |
| 29-212, gnl|rn3|chr20 (14545967-14546191) | |
| 29-212, gnl|tetNig1|chr2 (5921803-5921610) | |
| 29-212, gnl|xenTro1|scaffold_94 (635719-635497) | |
| 213-433, gnl|bosTau2|chr26 (3844879-3845099) | |
| 213-433, gnl|canFam2|chr26 (37630865-37630634) | |
| 213-433, gnl|danRer3|chr12 (3859106-3858877) | |
| 213-433, gnl|dasNov1|scaffold_4838 (58531-58763) | |
| 213-433, gnl|echTel1|scaffold_239741 (1527-1295) | |
| 213-433, gnl|fr1|chrUn (9094838-9095070) | |
| 213-433, gnl|galGal2|chr6 (5971340-5971108) | |
| 213-433, gnl|hg17|chr10 (55261072-55261304) | |
| 213-433, gnl|Hg17|chr10 (55261299-55261079) | |
| 213-433, gnl|mm7|chr10 (74280083-74279852) | |
| 213-433, gnl|Mm7|chr10 (74279856-74280076) | |
| 213-433, gnl|monDom2|scaffold_62 (6258335-6258103) | |
| 213-433, gnl|oryCun1|scaffold_212097 (101348-101579) | |
| 213-433, gnl|panTro1|chr8 (56172214-56172446) | |
| 213-433, gnl|rheMac2|chr9 (83497884-83497652) | |
| 213-433, gnl|rn3|chr20 (14535923-14536153) | |
| 213-433, gnl|tetNig1|chr2 (5922193-5921965) | |
| 213-433, gnl|xenTro1|scaffold_94 (637083-636855) | |
| 436-594, gnl|bosTau2|chr26 (3848851-3849008) | |
| 436-594, gnl|Hg17|chr10 (55257318-55257158) | |
| 436-594, gnl|Mm7|chr10 (74282334-74282494) | |
| 664-774, gnl|bosTau2|chr26 (3872438-3872547) | |
| 664-774, gnl|Hg17|chr10 (55240431-55240322) | |
| 664-774, gnl|Mm7|chr10 (74297932-74298041) |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 29-212, gnl|bosTau2|chr26 (3829252-3829434) | |
| 29-212, gnl|canFam2|chr26 (37623810-37623587) | |
| 29-212, gnl|danRer3|chr12 (3855565-3855343) | |
| 29-212, gnl|dasNov1|scaffold_4838 (60215-60438) | |
| 29-212, gnl|echTel1|scaffold_22198 (1604-1404) | |
| 29-212, gnl|fr1|chrUn (9096226-9096450) | |
| 29-212, gnl|galGal2|chr6 (5966476-5966252) | |
| 29-212, gnl|hg17|chr10 (55270069-55270293) | |
| 29-212, gnl|Hg17|chr10 (55270268-55270086) | |
| 29-212, gnl|mm7|chr10 (74277045-74276821) | |
| 29-212, gnl|Mm7|chr10 (74276844-74277026) | |
| 29-212, gnl|monDom2|scaffold_62 (6253854-6253619) | |
| 29-212, gnl|oryCun1|scaffold_212097 (109452-109676) | |
| 29-212, gnl|panTro1|chr8 (56181259-56181483) | |
| 29-212, gnl|rheMac2|chr9 (83489315-83489093) | |
| 29-212, gnl|rn3|chr20 (14545967-14546191) | |
| 29-212, gnl|tetNig1|chr2 (5921803-5921610) | |
| 29-212, gnl|xenTro1|scaffold_94 (635719-635497) | |
| 213-433, gnl|bosTau2|chr26 (3844879-3845099) | |
| 213-433, gnl|canFam2|chr26 (37630865-37630634) | |
| 213-433, gnl|danRer3|chr12 (3859106-3858877) | |
| 213-433, gnl|dasNov1|scaffold_4838 (58531-58763) | |
| 213-433, gnl|echTel1|scaffold_239741 (1527-1295) | |
| 213-433, gnl|fr1|chrUn (9094838-9095070) | |
| 213-433, gnl|galGal2|chr6 (5971340-5971108) | |
| 213-433, gnl|hg17|chr10 (55261072-55261304) | |
| 213-433, gnl|Hg17|chr10 (55261299-55261079) | |
| 213-433, gnl|mm7|chr10 (74280083-74279852) | |
| 213-433, gnl|Mm7|chr10 (74279856-74280076) | |
| 213-433, gnl|monDom2|scaffold_62 (6258335-6258103) | |
| 213-433, gnl|oryCun1|scaffold_212097 (101348-101579) | |
| 213-433, gnl|panTro1|chr8 (56172214-56172446) | |
| 213-433, gnl|rheMac2|chr9 (83497884-83497652) | |
| 213-433, gnl|rn3|chr20 (14535923-14536153) | |
| 213-433, gnl|tetNig1|chr2 (5922193-5921965) | |
| 213-433, gnl|xenTro1|scaffold_94 (637083-636855) | |
| 436-594, gnl|bosTau2|chr26 (3848851-3849008) | |
| 436-594, gnl|Hg17|chr10 (55257318-55257158) | |
| 436-594, gnl|Mm7|chr10 (74282334-74282494) | |
| 664-774, gnl|bosTau2|chr26 (3872438-3872547) | |
| 664-774, gnl|Hg17|chr10 (55240431-55240322) | |
| 664-774, gnl|Mm7|chr10 (74297932-74298041) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eru (0.120048) | |
| cty (0.10408) |