Non-Coding RNA Search

Ss1.1-Ova1-OVRM10115G10.5

Sequence:


               
               ATGTCCCCGCGCTGACCGCCCCGGGCCCGTGCCCGCCCGTGTAGATGCGCCTGGGCCAAC
CCCGCGCAACCATGTAAACGGCGCCCGCAAGCGGACGCTGGCTTCTCCGCCCGCGACACC
TCTGCCCTGCCCCGGGCCCCGGGGCCCTCGATGAGGACACACCATGCTGACCGGGGTGAC
CGATGGGATCTTCTGCTGCCTGCTAGGCGCGCCACCCAATGCAGTGGGGCCATTGGAGAG
CGTGGAGTCCAGCGATGGCTACACCTTTGTGGAAGTCAAACCTGGCCGAGTGCTGCGGGT
GAAGCATGCTGGACCCGCTCCAGCCCCCACCCCATCTCCACCACTGTCGGACACTGCCCA
GGGGGACCAAACCGGCTTGGTCCGCTGCCAGCGCAGAATCACTGTGTACCGCAATGGGCG
GTTACTGGTGGAGAATCTGGGCCGGGCACCACGAGCTGACCTCCTGCACGGGCAGAATGG
CTCCGGGGAGCCACCAGCCGCCCTAGAGGTAGAGCTGGCGGACCCAGCCGGTAGCGATGG
CCGCTCGGGCACAGGCAGTGCTGGGAGTGGCAGTGGTGGGCGACGGAGGCGAGCCCGACG
CCCAAAGCGGACCATCCACATTGACTGTGAGAAGCGCATCACCAGCTGCAAGGGCGCCCA
GGCCGACGTGGTGCTCTTTTTCATCCACGGCGTCGGTGGGTCCCTGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGTCCCCGCGCTGACCGCCCCGGGCCCGTGCCCGCCCGTGTAGATGCGCCTGGGCCAAC
CCCGCGCAACCATGTAAACGGCGCCCGCAAGCGGACGCTGGCTTCTCCGCCCGCGACACC
TCTGCCCTGCCCCGGGCCCCGGGGCCCTCGATGAGGACACACCATGCTGACCGGGGTGAC
CGATGGGATCTTCTGCTGCCTGCTAGGCGCGCCACCCAATGCAGTGGGGCCATTGGAGAG
CGTGGAGTCCAGCGATGGCTACACCTTTGTGGAAGTCAAACCTGGCCGAGTGCTGCGGGT
GAAGCATGCTGGACCCGCTCCAGCCCCCACCCCATCTCCACCACTGTCGGACACTGCCCA
GGGGGACCAAACCGGCTTGGTCCGCTGCCAGCGCAGAATCACTGTGTACCGCAATGGGCG
GTTACTGGTGGAGAATCTGGGCCGGGCACCACGAGCTGACCTCCTGCACGGGCAGAATGG
CTCCGGGGAGCCACCAGCCGCCCTAGAGGTAGAGCTGGCGGACCCAGCCGGTAGCGATGG
CCGCTCGGGCACAGGCAGTGCTGGGAGTGGCAGTGGTGGGCGACGGAGGCGAGCCCGACG
CCCAAAGCGGACCATCCACATTGACTGTGAGAAGCGCATCACCAGCTGCAAGGGCGCCCA
GGCCGACGTGGTGCTCTTTTTCATCCACGGCGTCGGTGGGTCCCTGGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q8BYW4_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8BYW4_MOUSE

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-156, gnl|bosTau2|chr7 (2793897-2794052)
               

               
               1-156, gnl|Hg17|chr19 (17275205-17275050)
               

               
               1-156, gnl|Mm7|chr8 (69930704-69930550)
               


               
               338-708, gnl|bosTau2|chr7 (2794867-2795237)
               

               
               338-708, gnl|Hg17|chr19 (17273238-17272860)
               

               
               338-708, gnl|Mm7|chr8 (69928875-69928526)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-156, gnl|bosTau2|chr7 (2793897-2794052)
               

               
               1-156, gnl|Hg17|chr19 (17275205-17275050)
               

               
               1-156, gnl|Mm7|chr8 (69930704-69930550)
               


               
               338-708, gnl|bosTau2|chr7 (2794867-2795237)
               

               
               338-708, gnl|Hg17|chr19 (17273238-17272860)
               

               
               338-708, gnl|Mm7|chr8 (69928875-69928526)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               eep (0.122564)
               

               
               ebs (0.118301)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)
               

               
               ebs (0.118301)

	1-156, gnl\|bosTau2\|chr7 (2793897-2794052)
	1-156, gnl\|Hg17\|chr19 (17275205-17275050)
	1-156, gnl\|Mm7\|chr8 (69930704-69930550)

	338-708, gnl\|bosTau2\|chr7 (2794867-2795237)
	338-708, gnl\|Hg17\|chr19 (17273238-17272860)
	338-708, gnl\|Mm7\|chr8 (69928875-69928526)