Non-Coding RNA Search

Ss1.1-Ova1-OVRM10116B08.5

Sequence:


               
               TGGCATGTGTTGACTAGGGTAGCCCGTCAGGCAGCCGCCACAGGGGTCGGGAGAGAAAGG
CGCGCGGTATCGCAAGGATTAGCAGCAAAATGAAGGTGAAGATGCTGAGCCGGAACCCGG
ACAACTATGTCCGCGAAACTAAATTGGACTTACAGAGAGTTCCAAGAAACTATGATCCTG
CCTTACATCCTTTTGAGGTCCCGCGAGAATATGTAAGAGCTTTAAATGCTACCAAACTGG
AACGAGTGTTTGCAAAACCATTCCTTGCTTCCCTGGATGGTCACCGAGATGGAGTCAATT
GCTTGGCCAAGCATCCAAAGAGCCTGGCCACTGTCCTTTCTGGGGCATGTGATGGAGAGG
TTAGAATTTGGAACTTAACTAAACGAAAATGTATCCGTACAATACAAGCGCATGAAGGTT
TTGTACGAGGAATATGTACTCGCTTTTGCGGAACTTCTTTTTTCACTGTTGGTGATGACA
AAACTGTGAAGCAGTGGAAAATGGATGGACCAAGCTATGGAGAAGATGAGGAACCATTGC
ATACAATATTAGGAAAGACAGTATATACAGGAATTGATCATCACTGGAAAGAAGCTATTT
TTGCCACATGTGGACAGCAAGTAGACATTTGGGATGAACAAAGAACCAATCCTATTTGTT
CAATGACCTGGGGATTTGACAGTATAAGCAGTGTTAAGTTTAACCCAATTGAGACATTTC
TCTTGGGAAGTTGTGCTTCTGACAGGAATATAGTGCTATATGATATGAGGCAAGCTACTC
CTCTGAAAAAGGTCATCTTAGATATGAGAACAAATACAATTGGCTGGAACCCTATGGAAG
CTTTCATTTTTACTGCAGCAAACGAAGATTACAACTTATATACTTTTGATATGCGTGCGC
TGGACACCCCTGTAATGGTGCATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGCATGTGTTGACTAGGGTAGCCCGTCAGGCAGCCGCCACAGGGGTCGGGAGAGAAAGG
CGCGCGGTATCGCAAGGATTAGCAGCAAAATGAAGGTGAAGATGCTGAGCCGGAACCCGG
ACAACTATGTCCGCGAAACTAAATTGGACTTACAGAGAGTTCCAAGAAACTATGATCCTG
CCTTACATCCTTTTGAGGTCCCGCGAGAATATGTAAGAGCTTTAAATGCTACCAAACTGG
AACGAGTGTTTGCAAAACCATTCCTTGCTTCCCTGGATGGTCACCGAGATGGAGTCAATT
GCTTGGCCAAGCATCCAAAGAGCCTGGCCACTGTCCTTTCTGGGGCATGTGATGGAGAGG
TTAGAATTTGGAACTTAACTAAACGAAAATGTATCCGTACAATACAAGCGCATGAAGGTT
TTGTACGAGGAATATGTACTCGCTTTTGCGGAACTTCTTTTTTCACTGTTGGTGATGACA
AAACTGTGAAGCAGTGGAAAATGGATGGACCAAGCTATGGAGAAGATGAGGAACCATTGC
ATACAATATTAGGAAAGACAGTATATACAGGAATTGATCATCACTGGAAAGAAGCTATTT
TTGCCACATGTGGACAGCAAGTAGACATTTGGGATGAACAAAGAACCAATCCTATTTGTT
CAATGACCTGGGGATTTGACAGTATAAGCAGTGTTAAGTTTAACCCAATTGAGACATTTC
TCTTGGGAAGTTGTGCTTCTGACAGGAATATAGTGCTATATGATATGAGGCAAGCTACTC
CTCTGAAAAAGGTCATCTTAGATATGAGAACAAATACAATTGGCTGGAACCCTATGGAAG
CTTTCATTTTTACTGCAGCAAACGAAGATTACAACTTATATACTTTTGATATGCGTGCGC
TGGACACCCCTGTAATGGTGCATA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|50809125|ref|XP_429003.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|50809125|ref|XP_429003.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               158-367, gnl|bosTau2|chrX (43644738-43644947)
               

               
               158-367, gnl|Hg17|chr8 (104501666-104501875)
               

               
               158-367, gnl|Mm7|chr15 (39124160-39124367)
               


               
               554-722, gnl|bosTau2|chrX (43652728-43652896)
               

               
               554-722, gnl|Hg17|chr8 (104508497-104508665)
               

               
               554-722, gnl|Mm7|chr15 (39129776-39129944)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               158-367, gnl|bosTau2|chrX (43644738-43644947)
               

               
               158-367, gnl|Hg17|chr8 (104501666-104501875)
               

               
               158-367, gnl|Mm7|chr15 (39124160-39124367)
               


               
               554-722, gnl|bosTau2|chrX (43652728-43652896)
               

               
               554-722, gnl|Hg17|chr8 (104508497-104508665)
               

               
               554-722, gnl|Mm7|chr15 (39129776-39129944)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               tes (0.207814)
               

               
               nco (0.161734)
               

               
               lun (0.150489)
               

               
               spl (0.143184)
               

               
               pgl (0.118483)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.207814)
               

               
               nco (0.161734)
               

               
               lun (0.150489)
               

               
               spl (0.143184)
               

               
               pgl (0.118483)

	158-367, gnl\|bosTau2\|chrX (43644738-43644947)
	158-367, gnl\|Hg17\|chr8 (104501666-104501875)
	158-367, gnl\|Mm7\|chr15 (39124160-39124367)

	554-722, gnl\|bosTau2\|chrX (43652728-43652896)
	554-722, gnl\|Hg17\|chr8 (104508497-104508665)
	554-722, gnl\|Mm7\|chr15 (39129776-39129944)

	tes (0.207814)
	nco (0.161734)
	lun (0.150489)
	spl (0.143184)
	pgl (0.118483)