Non-Coding RNA Search

Ss1.1-Ova1-OVRM10116D06.5

Sequence:


               
               CCGGGATCATCTAACCTGAGCGCAGTGCAAGGAATTATCACCAGAAGTTCACAGGCTACT
TGTACAGAGAAAAATTAGCACTCAAAGAAAATCTTCATTTTTGCTTTAGATTGACTTTGG
GGATTCGAATTTTCATCAGTGCAAATATAAATCTCTCTCTCCTGCTCTGAGGCTAATTGG
CACCGTATTTTCCCTTTGTGTCTTGTCACTCTGCCACGTCTTGTCTCGTGCTGGCCTCTA
AGTCAAGGACCCAGTGAACTGACTTTCTAGTTCTAGAAGTTCCACTGCAAGGCCAGAAAA
GCTTGAGAAAGGTATTGTGGACGAAGCAAAGGTAGACCCCCATCACTCGCCTTTACTGCA
CCCCTGGGCCTGTGAACGATGACAACATCTGACATTGTGCACCAGCTACCTCTGCTTCCA
TCGCAGAGAAAAGGCCATACGAACTAACAATGGAAGAGGAGCATGGACTCAGACATCAAG
GAAGAAGCCATTTTCCCAGGTCCTCCTTTCTGCATCTCACCATCCCTAGTTACAGATAAC
TCCATTGAACAGCATCTATTCAGAAACTATATTGAATAAAAAGATTGATGGAAGGGCTCA
AGTGGGTAGCAACTATGAAACAGAAATAGGACACTCAGTTACAAACATTCGCTCTTTTAG
TTTTTCAGAAAATGCATCCCTGATTTCATGCATTCCCAGCTTGAAAGCCCAGCCATATTA
CTCTAGTCCCTCCCAAACTGTTTTAGGAGGTCATTTCTGTTTTGTTTGTGATATTTAGAT
GTGCTGACTTCAGGAATTTCACCTTTAACTTCAGCATTCCAGATGAAGTTTCCTGACTCA
GTGCTTTGGCATAAGGAACTTTAAAACAAATGGTAAGGAAAATTGGAGATGCTAACATCC
TCCCCCATCCCAATTGCACCTTAAAGTATGCATGTCACCTTCAAGGTTTTATAATTGCAC
TGTTTGTTTTATGTATGTACAGATTAAAATTATTGCTACATTTGAGGAAAATAAAATTGC
TTGCTTCTATGTAATTCCTGTCAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCGGGATCATCTAACCTGAGCGCAGTGCAAGGAATTATCACCAGAAGTTCACAGGCTACT
TGTACAGAGAAAAATTAGCACTCAAAGAAAATCTTCATTTTTGCTTTAGATTGACTTTGG
GGATTCGAATTTTCATCAGTGCAAATATAAATCTCTCTCTCCTGCTCTGAGGCTAATTGG
CACCGTATTTTCCCTTTGTGTCTTGTCACTCTGCCACGTCTTGTCTCGTGCTGGCCTCTA
AGTCAAGGACCCAGTGAACTGACTTTCTAGTTCTAGAAGTTCCACTGCAAGGCCAGAAAA
GCTTGAGAAAGGTATTGTGGACGAAGCAAAGGTAGACCCCCATCACTCGCCTTTACTGCA
CCCCTGGGCCTGTGAACGATGACAACATCTGACATTGTGCACCAGCTACCTCTGCTTCCA
TCGCAGAGAAAAGGCCATACGAACTAACAATGGAAGAGGAGCATGGACTCAGACATCAAG
GAAGAAGCCATTTTCCCAGGTCCTCCTTTCTGCATCTCACCATCCCTAGTTACAGATAAC
TCCATTGAACAGCATCTATTCAGAAACTATATTGAATAAAAAGATTGATGGAAGGGCTCA
AGTGGGTAGCAACTATGAAACAGAAATAGGACACTCAGTTACAAACATTCGCTCTTTTAG
TTTTTCAGAAAATGCATCCCTGATTTCATGCATTCCCAGCTTGAAAGCCCAGCCATATTA
CTCTAGTCCCTCCCAAACTGTTTTAGGAGGTCATTTCTGTTTTGTTTGTGATATTTAGAT
GTGCTGACTTCAGGAATTTCACCTTTAACTTCAGCATTCCAGATGAAGTTTCCTGACTCA
GTGCTTTGGCATAAGGAACTTTAAAACAAATGGTAAGGAAAATTGGAGATGCTAACATCC
TCCCCCATCCCAATTGCACCTTAAAGTATGCATGTCACCTTCAAGGTTTTATAATTGCAC
TGTTTGTTTTATGTATGTACAGATTAAAATTATTGCTACATTTGAGGAAAATAAAATTGC
TTGCTTCTATGTAATTCCTGTCAT

Predicted RNA structure(s): 6 entry(ies)

More info

Predicted RNA structure(s): 6 entry(ies)

Help | Less info


               
               42-147, - strand, RNAz p=0.526777
               

               
               58-153, - strand, RNAz p=0.629556
               

               
               330-525, - strand, RNAz p=0.88684
               

               
               340-440, - strand, RNAz p=0.710155
               

               
               725-991, - strand, RNAz p=0.915163
               

               
               774-896, - strand, RNAz p=0.935602

Predicted RNA structure(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               42-147, - strand, RNAz p=0.526777
               

               
               58-153, - strand, RNAz p=0.629556
               

               
               330-525, - strand, RNAz p=0.88684
               

               
               340-440, - strand, RNAz p=0.710155
               

               
               725-991, - strand, RNAz p=0.915163
               

               
               774-896, - strand, RNAz p=0.935602

Predicted microRNA(s): 1 entry(ies)

More info

Predicted microRNA(s): 1 entry(ies)

Help | Less info


               
               60-158, + strand, RNAmicro p=0.999423

Predicted microRNA(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               60-158, + strand, RNAmicro p=0.999423

Aligned organism(s): 25 entry(ies)

More info

Aligned organism(s): 25 entry(ies)

Help | Less info


               
               3-1044, gnl|bosTau2|chr11 (53519960-53521013)
               

               
               3-1044, gnl|canFam2|chr17 (22104367-22105778)
               

               
               3-1044, gnl|canFam2|chr17 (22104617-22105639)
               

               
               3-1044, gnl|dasNov1|scaffold_3899 (76396-74995)
               

               
               3-1044, gnl|dasNov1|scaffold_3899 (76150-75135)
               

               
               3-1044, gnl|echTel1|scaffold_325460 (34987-36393)
               

               
               3-1044, gnl|echTel1|scaffold_325460 (35222-36272)
               

               
               3-1044, gnl|hg17|chr2 (24903876-24905243)
               

               
               3-1044, gnl|Hg17|chr2 (24904050-24905057)
               

               
               3-1044, gnl|hg17|chr5 (113566996-113567996)
               

               
               3-1044, gnl|loxAfr1|scaffold_7869 (37071-38424)
               

               
               3-1044, gnl|loxAfr1|scaffold_7869 (37322-38340)
               

               
               3-1044, gnl|mm7|chr12 (4174959-4173565)
               

               
               3-1044, gnl|mm7|chr12 (4174740-4173706)
               

               
               3-1044, gnl|Mm7|chr12 (4174788-4173759)
               

               
               3-1044, gnl|monDom2|scaffold_1 (152463498-152462077)
               

               
               3-1044, gnl|monDom2|scaffold_1 (152463204-152462149)
               

               
               3-1044, gnl|oryCun1|scaffold_145591 (15606-14276)
               

               
               3-1044, gnl|oryCun1|scaffold_145591 (15386-14405)
               

               
               3-1044, gnl|panTro1|chr12 (25782362-25783733)
               

               
               3-1044, gnl|panTro1|chr4 (119722758-119723759)
               

               
               3-1044, gnl|rheMac2|chr13 (24689794-24691166)
               

               
               3-1044, gnl|rheMac2|chr6 (110507024-110508000)
               

               
               3-1044, gnl|rn3|chr6 (27228514-27227294)
               

               
               3-1044, gnl|rn3|chr6 (27228329-27227348)

Aligned organism(s): 25 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-1044, gnl|bosTau2|chr11 (53519960-53521013)
               

               
               3-1044, gnl|canFam2|chr17 (22104367-22105778)
               

               
               3-1044, gnl|canFam2|chr17 (22104617-22105639)
               

               
               3-1044, gnl|dasNov1|scaffold_3899 (76396-74995)
               

               
               3-1044, gnl|dasNov1|scaffold_3899 (76150-75135)
               

               
               3-1044, gnl|echTel1|scaffold_325460 (34987-36393)
               

               
               3-1044, gnl|echTel1|scaffold_325460 (35222-36272)
               

               
               3-1044, gnl|hg17|chr2 (24903876-24905243)
               

               
               3-1044, gnl|Hg17|chr2 (24904050-24905057)
               

               
               3-1044, gnl|hg17|chr5 (113566996-113567996)
               

               
               3-1044, gnl|loxAfr1|scaffold_7869 (37071-38424)
               

               
               3-1044, gnl|loxAfr1|scaffold_7869 (37322-38340)
               

               
               3-1044, gnl|mm7|chr12 (4174959-4173565)
               

               
               3-1044, gnl|mm7|chr12 (4174740-4173706)
               

               
               3-1044, gnl|Mm7|chr12 (4174788-4173759)
               

               
               3-1044, gnl|monDom2|scaffold_1 (152463498-152462077)
               

               
               3-1044, gnl|monDom2|scaffold_1 (152463204-152462149)
               

               
               3-1044, gnl|oryCun1|scaffold_145591 (15606-14276)
               

               
               3-1044, gnl|oryCun1|scaffold_145591 (15386-14405)
               

               
               3-1044, gnl|panTro1|chr12 (25782362-25783733)
               

               
               3-1044, gnl|panTro1|chr4 (119722758-119723759)
               

               
               3-1044, gnl|rheMac2|chr13 (24689794-24691166)
               

               
               3-1044, gnl|rheMac2|chr6 (110507024-110508000)
               

               
               3-1044, gnl|rn3|chr6 (27228514-27227294)
               

               
               3-1044, gnl|rn3|chr6 (27228329-27227348)

Expressed library(ies): 7 entry(ies)

More info

Expressed library(ies): 7 entry(ies)

Help | Less info


               
               ebs (0.236602)
               

               
               spc (0.226732)
               

               
               gul (0.177588)
               

               
               fco (0.157208)
               

               
               lyg (0.133103)
               

               
               bla (0.124347)
               

               
               eje (0.0988338)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.236602)
               

               
               spc (0.226732)
               

               
               gul (0.177588)
               

               
               fco (0.157208)
               

               
               lyg (0.133103)
               

               
               bla (0.124347)
               

               
               eje (0.0988338)

	42-147, - strand, RNAz p=0.526777
	58-153, - strand, RNAz p=0.629556
	330-525, - strand, RNAz p=0.88684
	340-440, - strand, RNAz p=0.710155
	725-991, - strand, RNAz p=0.915163
	774-896, - strand, RNAz p=0.935602

	3-1044, gnl\|bosTau2\|chr11 (53519960-53521013)
	3-1044, gnl\|canFam2\|chr17 (22104367-22105778)
	3-1044, gnl\|canFam2\|chr17 (22104617-22105639)
	3-1044, gnl\|dasNov1\|scaffold_3899 (76396-74995)
	3-1044, gnl\|dasNov1\|scaffold_3899 (76150-75135)
	3-1044, gnl\|echTel1\|scaffold_325460 (34987-36393)
	3-1044, gnl\|echTel1\|scaffold_325460 (35222-36272)
	3-1044, gnl\|hg17\|chr2 (24903876-24905243)
	3-1044, gnl\|Hg17\|chr2 (24904050-24905057)
	3-1044, gnl\|hg17\|chr5 (113566996-113567996)
	3-1044, gnl\|loxAfr1\|scaffold_7869 (37071-38424)
	3-1044, gnl\|loxAfr1\|scaffold_7869 (37322-38340)
	3-1044, gnl\|mm7\|chr12 (4174959-4173565)
	3-1044, gnl\|mm7\|chr12 (4174740-4173706)
	3-1044, gnl\|Mm7\|chr12 (4174788-4173759)
	3-1044, gnl\|monDom2\|scaffold_1 (152463498-152462077)
	3-1044, gnl\|monDom2\|scaffold_1 (152463204-152462149)
	3-1044, gnl\|oryCun1\|scaffold_145591 (15606-14276)
	3-1044, gnl\|oryCun1\|scaffold_145591 (15386-14405)
	3-1044, gnl\|panTro1\|chr12 (25782362-25783733)
	3-1044, gnl\|panTro1\|chr4 (119722758-119723759)
	3-1044, gnl\|rheMac2\|chr13 (24689794-24691166)
	3-1044, gnl\|rheMac2\|chr6 (110507024-110508000)
	3-1044, gnl\|rn3\|chr6 (27228514-27227294)
	3-1044, gnl\|rn3\|chr6 (27228329-27227348)

	ebs (0.236602)
	spc (0.226732)
	gul (0.177588)
	fco (0.157208)
	lyg (0.133103)
	bla (0.124347)
	eje (0.0988338)