Non-Coding RNA Search

Ss1.1-Ova1-OVRM10116G12.5

Sequence:


               
               CAAGACTGAAATTTATTATTAGACAAATTAATTATAGAAAAAAACCTGTGGCAAAAATGT
TTCTTTCTTATTTTTTTTTTTTTCTTTTCATAAAACAGACTTGAAAGTATTATACAGGGA
TTGGCATTCTTCCCGGTCACTGGTAACAATAGCAATATGTGTCCAGGGACACAGAATGTT
GGTTTCTAACAGACTACTTCCAAAAACAGTTTGAGAAAAAAAACTGTCTGATTTTAAGTC
TCTAGAGGTCTGTAATAGTTTTTACATTTTTCAGGCAGTGTAAAGTTTTTTGATAAGGCC
ATTTTAGGTGGCTCACTTTCTCATTAAGATATATATAGAGAACCACTTTTTGTAGATTAG
TATAAGAAAAATATTTACCCTGTTTTGGGGCAAATGCTACCTATTTGTGTCACCTTTTGC
TGAACTGACTCACAGTTAGACAATCCATGGTTTAATGCACATGAAATTACCTATATTTTA
TACTGTTTCAATGTACAGGAGAAAGGTTACTGTAAACTGTGTTATGTTGGTGCTTCTGTG
AATTAAGTTGTGGTTTCATCATGAGTCTTATGGTCTTAATGTTCTTTGTTGATAAGACAA
GTTTAGAATTGGTTTACTTATAACAAAAAAGAATTTCAAAAAAAATGGTTTGCTTAAAAA
ATTTCATGTGAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAGACTGAAATTTATTATTAGACAAATTAATTATAGAAAAAAACCTGTGGCAAAAATGT
TTCTTTCTTATTTTTTTTTTTTTCTTTTCATAAAACAGACTTGAAAGTATTATACAGGGA
TTGGCATTCTTCCCGGTCACTGGTAACAATAGCAATATGTGTCCAGGGACACAGAATGTT
GGTTTCTAACAGACTACTTCCAAAAACAGTTTGAGAAAAAAAACTGTCTGATTTTAAGTC
TCTAGAGGTCTGTAATAGTTTTTACATTTTTCAGGCAGTGTAAAGTTTTTTGATAAGGCC
ATTTTAGGTGGCTCACTTTCTCATTAAGATATATATAGAGAACCACTTTTTGTAGATTAG
TATAAGAAAAATATTTACCCTGTTTTGGGGCAAATGCTACCTATTTGTGTCACCTTTTGC
TGAACTGACTCACAGTTAGACAATCCATGGTTTAATGCACATGAAATTACCTATATTTTA
TACTGTTTCAATGTACAGGAGAAAGGTTACTGTAAACTGTGTTATGTTGGTGCTTCTGTG
AATTAAGTTGTGGTTTCATCATGAGTCTTATGGTCTTAATGTTCTTTGTTGATAAGACAA
GTTTAGAATTGGTTTACTTATAACAAAAAAGAATTTCAAAAAAAATGGTTTGCTTAAAAA
ATTTCATGTGAG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               80-234, - strand, RNAz p=0.922045

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               80-234, - strand, RNAz p=0.922045

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-672, gnl|bosTau2|chr13 (5640959-5640289)
               

               
               1-672, gnl|Hg17|chr10 (11412647-11413312)
               

               
               1-672, gnl|Mm7|chr2 (6462727-6462047)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-672, gnl|bosTau2|chr13 (5640959-5640289)
               

               
               1-672, gnl|Hg17|chr10 (11412647-11413312)
               

               
               1-672, gnl|Mm7|chr2 (6462727-6462047)

Expressed library(ies): 8 entry(ies)

More info

Expressed library(ies): 8 entry(ies)

Help | Less info


               
               fco (0.157208)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               ese (0.126502)
               

               
               clu (0.119646)
               

               
               ecc (0.115035)
               

               
               cbl (0.114797)
               

               
               cty (0.10408)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.157208)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               ese (0.126502)
               

               
               clu (0.119646)
               

               
               ecc (0.115035)
               

               
               cbl (0.114797)
               

               
               cty (0.10408)

	1-672, gnl\|bosTau2\|chr13 (5640959-5640289)
	1-672, gnl\|Hg17\|chr10 (11412647-11413312)
	1-672, gnl\|Mm7\|chr2 (6462727-6462047)

	fco (0.157208)
	liv (0.146284)
	lin (0.145603)
	ese (0.126502)
	clu (0.119646)
	ecc (0.115035)
	cbl (0.114797)
	cty (0.10408)