Ss1.1-Ova1-OVRM10118A06.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TATACCAAGGATAAGCGTTTTCAGGCCTTCGTGAAGAAGAAGATGAGCAGTTCCGTCGTA CGGCGGCTCGGCATCCCAGAGTGCATATTGCTTGTGACCCAGCGGATCACCAAATACCCG GTTTTGTTCCAAAGAATATTGCAGTGTACCAAAGACAGTGAAGCAGAGCAGGAAGATCTG GCTCAGTCCCTGGGCCTGGTGAAGGATGTGATTGGAGCTGTGAACAGCAAAGTGGCAAGT TATGAAAAGAAAGTCCGTCTCAATGAGATTTATACGAAGACAGATAGCAAGTCGATCATG AGGATGAAGAGTGGTCAGATGTTTGCCAAGGAGGATCTGAAGCGGAAGAAGCTTGTGCGG GATGGGGGCGTGTTTCTGAAGAGTGCGGCAGGAAGGTTGAAAGAGGTTCAAGCGGTCCTG CTTACTGACATTTTAGTTTTCCTTCAAGAAAAAGACCAGAAATACATCTTTGCGTCACTG GACCAGAAATCAACAGTGATCTCTTTGAAGAAACTGATTGTAAGAGAAGTGGCACATGAG GAGAAAGGTTTATTTCTGATCAGTATGGGGATGAAAGATCCAGAGATGGTGGAAGTCCAT GCCAGCTCCAAAGAGGAGCGGAACAGCTGGATTCAGATCATCCAGGACACAATCAACACC CTGAACAGAGATGAAGATGAAGGAATTCCTAGTGAGAATGAGGAAGAAAAGAAAATGTTG GACACCAAAGCCCGGGAGTTAAAAGAGCAACTTCAACAAAAGGACCAACAGATCCTGCTT TTACTGGAAGAGAAGGAGATGATTTTCCGGGACATGACTGAGTGCAGCACTCCTTTGCCA GAGGATTGCTCCCCAACACACAGCTCTAGAATCCTCTTTCGCTCCAACACAGAAGAGGCT CTCAAAGGAGGACCATTAATGAAAAGTGCAATAAATGAGGTGGAGATCCTTCAGAGTTTG GTGAGTGGAAGCCTGGGAGGCACCCTTGGGCAGACTGTGAGCAGCCCTACTGAGCAAGAT GGCATGGTGGGCCCTGTTTCCCTGCCCCGGAGAGCAGAGACCTTTGGAGGGTTTGACAGC CATCAGATGAATGCTTCAAAAGGTGGTGAAAAGGAAGAGGGAGATGATGGCCAAGATCTT AGGAGAACAGAATCGGACAGTGGTCTGAAAAAGGGTGGAAATGCTAACGCGGGATTTATG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TATACCAAGGATAAGCGTTTTCAGGCCTTCGTGAAGAAGAAGATGAGCAGTTCCGTCGTA CGGCGGCTCGGCATCCCAGAGTGCATATTGCTTGTGACCCAGCGGATCACCAAATACCCG GTTTTGTTCCAAAGAATATTGCAGTGTACCAAAGACAGTGAAGCAGAGCAGGAAGATCTG GCTCAGTCCCTGGGCCTGGTGAAGGATGTGATTGGAGCTGTGAACAGCAAAGTGGCAAGT TATGAAAAGAAAGTCCGTCTCAATGAGATTTATACGAAGACAGATAGCAAGTCGATCATG AGGATGAAGAGTGGTCAGATGTTTGCCAAGGAGGATCTGAAGCGGAAGAAGCTTGTGCGG GATGGGGGCGTGTTTCTGAAGAGTGCGGCAGGAAGGTTGAAAGAGGTTCAAGCGGTCCTG CTTACTGACATTTTAGTTTTCCTTCAAGAAAAAGACCAGAAATACATCTTTGCGTCACTG GACCAGAAATCAACAGTGATCTCTTTGAAGAAACTGATTGTAAGAGAAGTGGCACATGAG GAGAAAGGTTTATTTCTGATCAGTATGGGGATGAAAGATCCAGAGATGGTGGAAGTCCAT GCCAGCTCCAAAGAGGAGCGGAACAGCTGGATTCAGATCATCCAGGACACAATCAACACC CTGAACAGAGATGAAGATGAAGGAATTCCTAGTGAGAATGAGGAAGAAAAGAAAATGTTG GACACCAAAGCCCGGGAGTTAAAAGAGCAACTTCAACAAAAGGACCAACAGATCCTGCTT TTACTGGAAGAGAAGGAGATGATTTTCCGGGACATGACTGAGTGCAGCACTCCTTTGCCA GAGGATTGCTCCCCAACACACAGCTCTAGAATCCTCTTTCGCTCCAACACAGAAGAGGCT CTCAAAGGAGGACCATTAATGAAAAGTGCAATAAATGAGGTGGAGATCCTTCAGAGTTTG GTGAGTGGAAGCCTGGGAGGCACCCTTGGGCAGACTGTGAGCAGCCCTACTGAGCAAGAT GGCATGGTGGGCCCTGTTTCCCTGCCCCGGAGAGCAGAGACCTTTGGAGGGTTTGACAGC CATCAGATGAATGCTTCAAAAGGTGGTGAAAAGGAAGAGGGAGATGATGGCCAAGATCTT AGGAGAACAGAATCGGACAGTGGTCTGAAAAAGGGTGGAAATGCTAACGCGGGATTTATG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 480-663, + strand, RNAz p=0.935114 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 480-663, + strand, RNAz p=0.935114 |
| Aligned organism(s): 56 entry(ies) | More info |
| Aligned organism(s): 56 entry(ies) | Help | Less info |
| 153-403, gnl|bosTau2|chr21 (9816577-9816827) | |
| 153-403, gnl|canFam2|chr3 (52151949-52152206) | |
| 153-403, gnl|danRer3|chr7 (5814400-5814139) | |
| 153-403, gnl|dasNov1|scaffold_27628 (5199-4945) | |
| 153-403, gnl|echTel1|scaffold_301723 (29545-29291) | |
| 153-403, gnl|fr1|chrUn (178514899-178514643) | |
| 153-403, gnl|galGal2|chr10 (14547756-14547497) | |
| 153-403, gnl|hg17|chr15 (84067306-84067565) | |
| 153-403, gnl|Hg17|chr15 (84067305-84067555) | |
| 153-403, gnl|loxAfr1|scaffold_24471 (8680-8425) | |
| 153-403, gnl|mm7|chr7 (71582355-71582612) | |
| 153-403, gnl|Mm7|chr7 (71582354-71582604) | |
| 153-403, gnl|monDom2|scaffold_12 (71861255-71861512) | |
| 153-403, gnl|oryCun1|scaffold_209163 (113810-114067) | |
| 153-403, gnl|panTro1|chr16 (84902762-84903021) | |
| 153-403, gnl|rheMac2|chr7 (65324764-65325023) | |
| 153-403, gnl|rn3|chr1 (131414108-131414365) | |
| 153-403, gnl|xenTro1|scaffold_71 (1184422-1184168) | |
| 480-663, gnl|bosTau2|chr21 (9820924-9821107) | |
| 480-663, gnl|canFam2|chr3 (52157112-52157280) | |
| 480-663, gnl|danRer3|chr22 (9314609-9314439) | |
| 480-663, gnl|dasNov1|scaffold_27628 (1207-1039) | |
| 480-663, gnl|echTel1|scaffold_301723 (25287-25119) | |
| 480-663, gnl|fr1|chrUn (74195467-74195635) | |
| 480-663, gnl|galGal2|chr10 (14544705-14544537) | |
| 480-663, gnl|hg17|chr15 (84071299-84071467) | |
| 480-663, gnl|Hg17|chr15 (84071300-84071483) | |
| 480-663, gnl|loxAfr1|scaffold_64095 (5318-5164) | |
| 480-663, gnl|mm7|chr7 (71588277-71588445) | |
| 480-663, gnl|Mm7|chr7 (71588278-71588461) | |
| 480-663, gnl|monDom2|scaffold_12 (71865079-71865247) | |
| 480-663, gnl|oryCun1|scaffold_209163 (115419-115587) | |
| 480-663, gnl|panTro1|chr16 (84906752-84906920) | |
| 480-663, gnl|rheMac2|chr7 (65329100-65329268) | |
| 480-663, gnl|rn3|chr1 (131420332-131420500) | |
| 480-663, gnl|tetNig1|chr1 (11544470-11544624) | |
| 480-663, gnl|xenTro1|scaffold_71 (1181282-1181114) | |
| 940-1104, gnl|bosTau2|chr21 (9828911-9829075) | |
| 940-1104, gnl|canFam2|chr3 (52162310-52162504) | |
| 940-1104, gnl|danRer3|chr7 (5807340-5807158) | |
| 940-1104, gnl|dasNov1|scaffold_39877 (12127-11929) | |
| 940-1104, gnl|echTel1|scaffold_301723 (20569-20372) | |
| 940-1104, gnl|fr1|chrUn (178510886-178510730) | |
| 940-1104, gnl|galGal2|chr10 (14543210-14543021) | |
| 940-1104, gnl|hg17|chr15 (84079206-84079401) | |
| 940-1104, gnl|Hg17|chr15 (84079226-84079387) | |
| 940-1104, gnl|loxAfr1|scaffold_131811 (760-958) | |
| 940-1104, gnl|mm7|chr7 (71594605-71594795) | |
| 940-1104, gnl|Mm7|chr7 (71594628-71594792) | |
| 940-1104, gnl|monDom2|scaffold_12 (71867373-71867565) | |
| 940-1104, gnl|oryCun1|scaffold_209163 (120261-120459) | |
| 940-1104, gnl|panTro1|chr16 (84914651-84914846) | |
| 940-1104, gnl|rheMac2|chr7 (65335080-65335278) | |
| 940-1104, gnl|rn3|chr1 (131427166-131427356) | |
| 940-1104, gnl|tetNig1|chrUn_random (136846227-136846074) | |
| 940-1104, gnl|xenTro1|scaffold_71 (1179893-1179704) |
| Aligned organism(s): 56 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 153-403, gnl|bosTau2|chr21 (9816577-9816827) | |
| 153-403, gnl|canFam2|chr3 (52151949-52152206) | |
| 153-403, gnl|danRer3|chr7 (5814400-5814139) | |
| 153-403, gnl|dasNov1|scaffold_27628 (5199-4945) | |
| 153-403, gnl|echTel1|scaffold_301723 (29545-29291) | |
| 153-403, gnl|fr1|chrUn (178514899-178514643) | |
| 153-403, gnl|galGal2|chr10 (14547756-14547497) | |
| 153-403, gnl|hg17|chr15 (84067306-84067565) | |
| 153-403, gnl|Hg17|chr15 (84067305-84067555) | |
| 153-403, gnl|loxAfr1|scaffold_24471 (8680-8425) | |
| 153-403, gnl|mm7|chr7 (71582355-71582612) | |
| 153-403, gnl|Mm7|chr7 (71582354-71582604) | |
| 153-403, gnl|monDom2|scaffold_12 (71861255-71861512) | |
| 153-403, gnl|oryCun1|scaffold_209163 (113810-114067) | |
| 153-403, gnl|panTro1|chr16 (84902762-84903021) | |
| 153-403, gnl|rheMac2|chr7 (65324764-65325023) | |
| 153-403, gnl|rn3|chr1 (131414108-131414365) | |
| 153-403, gnl|xenTro1|scaffold_71 (1184422-1184168) | |
| 480-663, gnl|bosTau2|chr21 (9820924-9821107) | |
| 480-663, gnl|canFam2|chr3 (52157112-52157280) | |
| 480-663, gnl|danRer3|chr22 (9314609-9314439) | |
| 480-663, gnl|dasNov1|scaffold_27628 (1207-1039) | |
| 480-663, gnl|echTel1|scaffold_301723 (25287-25119) | |
| 480-663, gnl|fr1|chrUn (74195467-74195635) | |
| 480-663, gnl|galGal2|chr10 (14544705-14544537) | |
| 480-663, gnl|hg17|chr15 (84071299-84071467) | |
| 480-663, gnl|Hg17|chr15 (84071300-84071483) | |
| 480-663, gnl|loxAfr1|scaffold_64095 (5318-5164) | |
| 480-663, gnl|mm7|chr7 (71588277-71588445) | |
| 480-663, gnl|Mm7|chr7 (71588278-71588461) | |
| 480-663, gnl|monDom2|scaffold_12 (71865079-71865247) | |
| 480-663, gnl|oryCun1|scaffold_209163 (115419-115587) | |
| 480-663, gnl|panTro1|chr16 (84906752-84906920) | |
| 480-663, gnl|rheMac2|chr7 (65329100-65329268) | |
| 480-663, gnl|rn3|chr1 (131420332-131420500) | |
| 480-663, gnl|tetNig1|chr1 (11544470-11544624) | |
| 480-663, gnl|xenTro1|scaffold_71 (1181282-1181114) | |
| 940-1104, gnl|bosTau2|chr21 (9828911-9829075) | |
| 940-1104, gnl|canFam2|chr3 (52162310-52162504) | |
| 940-1104, gnl|danRer3|chr7 (5807340-5807158) | |
| 940-1104, gnl|dasNov1|scaffold_39877 (12127-11929) | |
| 940-1104, gnl|echTel1|scaffold_301723 (20569-20372) | |
| 940-1104, gnl|fr1|chrUn (178510886-178510730) | |
| 940-1104, gnl|galGal2|chr10 (14543210-14543021) | |
| 940-1104, gnl|hg17|chr15 (84079206-84079401) | |
| 940-1104, gnl|Hg17|chr15 (84079226-84079387) | |
| 940-1104, gnl|loxAfr1|scaffold_131811 (760-958) | |
| 940-1104, gnl|mm7|chr7 (71594605-71594795) | |
| 940-1104, gnl|Mm7|chr7 (71594628-71594792) | |
| 940-1104, gnl|monDom2|scaffold_12 (71867373-71867565) | |
| 940-1104, gnl|oryCun1|scaffold_209163 (120261-120459) | |
| 940-1104, gnl|panTro1|chr16 (84914651-84914846) | |
| 940-1104, gnl|rheMac2|chr7 (65335080-65335278) | |
| 940-1104, gnl|rn3|chr1 (131427166-131427356) | |
| 940-1104, gnl|tetNig1|chrUn_random (136846227-136846074) | |
| 940-1104, gnl|xenTro1|scaffold_71 (1179893-1179704) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cly (0.120642) |