Ss1.1-Ova1-OVRM10119E05.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGACATGGCCGGCGAGGGGGATCCGCAGGACGCTGCGCACGACATGGGCAATCACCTGCC GCTCCTACCTGCAGAGGATGAGGAAGAAGATGAGATTGAAATGGAAGTTGAAGACCAGGA TAGCAAAGAACCCAAGAAACCAAACATCATCAATTTTGACACCAGTCTGCCCACATCACA TACATATCTGGGCTCTGACATGGAGGAATTTCACGGCAGGACTCTGCACGACGATGACAG CTGTCAGGTGATTCCAGTGCTGCCACAGGTGATGATGATTCTGATTCCTGGGCAGACTCT GCCTCTTCAGCTCTTCAGTCCCCAAGAAGTCAGTATGGTGCGGAATTTAATTCAGAAGGA TAGAACCTTTGCAGTTCTCGCATACAGTAATGTACAGGAAAGGGAAGCACAGTTTGGAAC AACAGCAGAGATATACGCTTATCGAGAAGAACAGGATTTCGGAATTGAAATTGTGAAAGT GAAAGCAATAGGAAGACAGAGATTCAAAGTCCTTGAAATCAGGACACAGTCAGACGGAAT CCAGCAAGCTAAAGTGCAAATTCTTCCTGAATGTGTGTTGCCTTCAACCATGTCTGCAGT TCAGTTAGAATCCCTCAATAAGTGCCAGATATTTCCTTCAAAACCTGTCTCATGGGAAGA CCAGTGTTCATATAAATGGTGGCAGAAATACCAGAAGAGAAAGTTTCATTGTGCAAATTT GACTTCATGGCCTCGCTGGCTGTATTCTTTATATGATGCTGAAACCTTAATGGATAGAAT TAAGAAACAGCTACGTGAATGGGATGAAAATCTAAAAGAGGATTCTCTTCCTTCAAATCC AATAGATTTTTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGACATGGCCGGCGAGGGGGATCCGCAGGACGCTGCGCACGACATGGGCAATCACCTGCC GCTCCTACCTGCAGAGGATGAGGAAGAAGATGAGATTGAAATGGAAGTTGAAGACCAGGA TAGCAAAGAACCCAAGAAACCAAACATCATCAATTTTGACACCAGTCTGCCCACATCACA TACATATCTGGGCTCTGACATGGAGGAATTTCACGGCAGGACTCTGCACGACGATGACAG CTGTCAGGTGATTCCAGTGCTGCCACAGGTGATGATGATTCTGATTCCTGGGCAGACTCT GCCTCTTCAGCTCTTCAGTCCCCAAGAAGTCAGTATGGTGCGGAATTTAATTCAGAAGGA TAGAACCTTTGCAGTTCTCGCATACAGTAATGTACAGGAAAGGGAAGCACAGTTTGGAAC AACAGCAGAGATATACGCTTATCGAGAAGAACAGGATTTCGGAATTGAAATTGTGAAAGT GAAAGCAATAGGAAGACAGAGATTCAAAGTCCTTGAAATCAGGACACAGTCAGACGGAAT CCAGCAAGCTAAAGTGCAAATTCTTCCTGAATGTGTGTTGCCTTCAACCATGTCTGCAGT TCAGTTAGAATCCCTCAATAAGTGCCAGATATTTCCTTCAAAACCTGTCTCATGGGAAGA CCAGTGTTCATATAAATGGTGGCAGAAATACCAGAAGAGAAAGTTTCATTGTGCAAATTT GACTTCATGGCCTCGCTGGCTGTATTCTTTATATGATGCTGAAACCTTAATGGATAGAAT TAAGAAACAGCTACGTGAATGGGATGAAAATCTAAAAGAGGATTCTCTTCCTTCAAATCC AATAGATTTTTC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 45 entry(ies) | More info |
| Aligned organism(s): 45 entry(ies) | Help | Less info |
| 71-184, gnl|bosTau2|chr22 (18140805-18140918) | |
| 71-184, gnl|canFam2|chr20 (17247548-17247407) | |
| 71-184, gnl|dasNov1|scaffold_41 (198172-198307) | |
| 71-184, gnl|echTel1|scaffold_310353 (40116-40238) | |
| 71-184, gnl|fr1|chrUn (169534697-169534603) | |
| 71-184, gnl|galGal2|chr12 (18052245-18052343) | |
| 71-184, gnl|hg17|chr3 (3191811-3191946) | |
| 71-184, gnl|Hg17|chr3 (3191954-3191847) | |
| 71-184, gnl|loxAfr1|scaffold_45607 (5270-5411) | |
| 71-184, gnl|mm7|chr6 (106889944-106890088) | |
| 71-184, gnl|Mm7|chr6 (106890093-106889980) | |
| 71-184, gnl|monDom2|scaffold_5 (28461514-28461644) | |
| 71-184, gnl|panTro1|chr2 (3242384-3242519) | |
| 71-184, gnl|rheMac2|chr2 (57831141-57831006) | |
| 71-184, gnl|rn3|chr4 (142395976-142396119) | |
| 71-184, gnl|tetNig1|chr11 (6472899-6473003) | |
| 71-184, gnl|xenTro1|scaffold_173 (1584801-1584927) | |
| 185-387, gnl|bosTau2|chr22 (18141525-18141727) | |
| 185-387, gnl|canFam2|chr20 (17248502-17248273) | |
| 185-387, gnl|dasNov1|scaffold_41 (197354-197570) | |
| 185-387, gnl|echTel1|scaffold_310353 (39755-39982) | |
| 185-387, gnl|fr1|chrUn (169535007-169534784) | |
| 185-387, gnl|galGal2|chr12 (18051900-18052117) | |
| 185-387, gnl|hg17|chr3 (3190742-3190973) | |
| 185-387, gnl|Hg17|chr3 (3190945-3190743) | |
| 185-387, gnl|loxAfr1|scaffold_45607 (4555-4786) | |
| 185-387, gnl|mm7|chr6 (106889092-106889313) | |
| 185-387, gnl|Mm7|chr6 (106889295-106889093) | |
| 185-387, gnl|monDom2|scaffold_5 (28460525-28460754) | |
| 185-387, gnl|panTro1|chr2 (3241292-3241523) | |
| 185-387, gnl|rheMac2|chr2 (57832098-57831867) | |
| 185-387, gnl|rn3|chr4 (142395197-142395413) | |
| 185-387, gnl|tetNig1|chr11 (6472558-6472773) | |
| 185-387, gnl|xenTro1|scaffold_173 (1584199-1584430) | |
| 537-697, gnl|bosTau2|chr22 (18147254-18147414) | |
| 537-697, gnl|canFam2|chr14 (60637187-60637284) | |
| 537-697, gnl|Hg17|chr3 (3184478-3184318) | |
| 537-697, gnl|hg17|chr7 (118412686-118412832) | |
| 537-697, gnl|loxAfr1|scaffold_52970 (136-292) | |
| 537-697, gnl|mm7|chr6 (106884936-106885092) | |
| 537-697, gnl|Mm7|chr6 (106885090-106884930) | |
| 537-697, gnl|monDom2|scaffold_5 (28454701-28454860) | |
| 537-697, gnl|panTro1|chr6 (120725099-120725245) | |
| 537-697, gnl|rheMac2|chr3 (156650911-156651057) | |
| 537-697, gnl|rn3|chr4 (46299523-46299711) |
| Aligned organism(s): 45 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 71-184, gnl|bosTau2|chr22 (18140805-18140918) | |
| 71-184, gnl|canFam2|chr20 (17247548-17247407) | |
| 71-184, gnl|dasNov1|scaffold_41 (198172-198307) | |
| 71-184, gnl|echTel1|scaffold_310353 (40116-40238) | |
| 71-184, gnl|fr1|chrUn (169534697-169534603) | |
| 71-184, gnl|galGal2|chr12 (18052245-18052343) | |
| 71-184, gnl|hg17|chr3 (3191811-3191946) | |
| 71-184, gnl|Hg17|chr3 (3191954-3191847) | |
| 71-184, gnl|loxAfr1|scaffold_45607 (5270-5411) | |
| 71-184, gnl|mm7|chr6 (106889944-106890088) | |
| 71-184, gnl|Mm7|chr6 (106890093-106889980) | |
| 71-184, gnl|monDom2|scaffold_5 (28461514-28461644) | |
| 71-184, gnl|panTro1|chr2 (3242384-3242519) | |
| 71-184, gnl|rheMac2|chr2 (57831141-57831006) | |
| 71-184, gnl|rn3|chr4 (142395976-142396119) | |
| 71-184, gnl|tetNig1|chr11 (6472899-6473003) | |
| 71-184, gnl|xenTro1|scaffold_173 (1584801-1584927) | |
| 185-387, gnl|bosTau2|chr22 (18141525-18141727) | |
| 185-387, gnl|canFam2|chr20 (17248502-17248273) | |
| 185-387, gnl|dasNov1|scaffold_41 (197354-197570) | |
| 185-387, gnl|echTel1|scaffold_310353 (39755-39982) | |
| 185-387, gnl|fr1|chrUn (169535007-169534784) | |
| 185-387, gnl|galGal2|chr12 (18051900-18052117) | |
| 185-387, gnl|hg17|chr3 (3190742-3190973) | |
| 185-387, gnl|Hg17|chr3 (3190945-3190743) | |
| 185-387, gnl|loxAfr1|scaffold_45607 (4555-4786) | |
| 185-387, gnl|mm7|chr6 (106889092-106889313) | |
| 185-387, gnl|Mm7|chr6 (106889295-106889093) | |
| 185-387, gnl|monDom2|scaffold_5 (28460525-28460754) | |
| 185-387, gnl|panTro1|chr2 (3241292-3241523) | |
| 185-387, gnl|rheMac2|chr2 (57832098-57831867) | |
| 185-387, gnl|rn3|chr4 (142395197-142395413) | |
| 185-387, gnl|tetNig1|chr11 (6472558-6472773) | |
| 185-387, gnl|xenTro1|scaffold_173 (1584199-1584430) | |
| 537-697, gnl|bosTau2|chr22 (18147254-18147414) | |
| 537-697, gnl|canFam2|chr14 (60637187-60637284) | |
| 537-697, gnl|Hg17|chr3 (3184478-3184318) | |
| 537-697, gnl|hg17|chr7 (118412686-118412832) | |
| 537-697, gnl|loxAfr1|scaffold_52970 (136-292) | |
| 537-697, gnl|mm7|chr6 (106884936-106885092) | |
| 537-697, gnl|Mm7|chr6 (106885090-106884930) | |
| 537-697, gnl|monDom2|scaffold_5 (28454701-28454860) | |
| 537-697, gnl|panTro1|chr6 (120725099-120725245) | |
| 537-697, gnl|rheMac2|chr3 (156650911-156651057) | |
| 537-697, gnl|rn3|chr4 (46299523-46299711) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| ste (0.540833) | |
| ssp (0.271039) | |
| spl (0.143184) | |
| cty (0.10408) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ste (0.540833) | |
| ssp (0.271039) | |
| spl (0.143184) | |
| cty (0.10408) |