Non-Coding RNA Search

Ss1.1-Ova1-OVRM10120A05.5

Sequence:


               
               TTCAAACAATAAAAAATTGTATTTTTTCAATATCGTATAAACAATAGTGTTCTAATTACC
TTTCAAAAAAAAATAATGTCCAGATAATAATTGCTTTTAATCTTATCAAAAAACCAAAAA
CCTAGGAGAACCAAGTTTAGGGAAGGTATGTGAGCAGTGCCCCCACTCTGCTCCCTAACT
AAATCCGTGTTTCTCTAGCAAAAAACATCAGCTTGCCTGCCGATCGAGAGCTCCAGCACT
AGGAACCCAGTGGTGCAGAATTTCCAAATGAAGATTTCTTGGGGGAGGATTTAAGGGCCA
AGAAGCAGATCTGAGTGTGGATGCAAGTGTGTGTGCACATATGTGGGTCCATGCAGGTCT
GTGTGATGAAGGCGCAATTAGACTTCTCCATGAGCCCTGGATGCTCCGGGAATTGCTGGC
CACATCCCGCTGGACCCTCTCGTTCTGTCCAAGTCTAGCCTTTCTGGGCACTCACCTTGG
TCCTGTGCATGTTTTTGGCTCTGTGTGGAGCTTTTTCCTCTCCACTGGGAAACTGACTTT
GGATACGTTAAACAGAATCCCTTCTTACACCAACTTTTTGTCCCTTCCCTGTGCCTGAGA
AAGGTAGGAGTAGGAAAGGAAGCTGGAAGAAGGCCTGGCTGTGACTCGGGACTCTCGGGC
CCTCCGTAATAGATGCTGGAGTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCAAACAATAAAAAATTGTATTTTTTCAATATCGTATAAACAATAGTGTTCTAATTACC
TTTCAAAAAAAAATAATGTCCAGATAATAATTGCTTTTAATCTTATCAAAAAACCAAAAA
CCTAGGAGAACCAAGTTTAGGGAAGGTATGTGAGCAGTGCCCCCACTCTGCTCCCTAACT
AAATCCGTGTTTCTCTAGCAAAAAACATCAGCTTGCCTGCCGATCGAGAGCTCCAGCACT
AGGAACCCAGTGGTGCAGAATTTCCAAATGAAGATTTCTTGGGGGAGGATTTAAGGGCCA
AGAAGCAGATCTGAGTGTGGATGCAAGTGTGTGTGCACATATGTGGGTCCATGCAGGTCT
GTGTGATGAAGGCGCAATTAGACTTCTCCATGAGCCCTGGATGCTCCGGGAATTGCTGGC
CACATCCCGCTGGACCCTCTCGTTCTGTCCAAGTCTAGCCTTTCTGGGCACTCACCTTGG
TCCTGTGCATGTTTTTGGCTCTGTGTGGAGCTTTTTCCTCTCCACTGGGAAACTGACTTT
GGATACGTTAAACAGAATCCCTTCTTACACCAACTTTTTGTCCCTTCCCTGTGCCTGAGA
AAGGTAGGAGTAGGAAAGGAAGCTGGAAGAAGGCCTGGCTGTGACTCGGGACTCTCGGGC
CCTCCGTAATAGATGCTGGAGTGG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               509-647, - strand, RNAz p=0.976945

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               509-647, - strand, RNAz p=0.976945

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-683, gnl|bosTau2|chr4 (49241230-49241922)
               

               
               1-683, gnl|Hg17|chr7 (129066613-129065897)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-683, gnl|bosTau2|chr4 (49241230-49241922)
               

               
               1-683, gnl|Hg17|chr7 (129066613-129065897)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               eye (0.170503)
               

               
               cag (0.151194)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eye (0.170503)
               

               
               cag (0.151194)

	1-683, gnl\|bosTau2\|chr4 (49241230-49241922)
	1-683, gnl\|Hg17\|chr7 (129066613-129065897)