Non-Coding RNA Search

Ss1.1-Ova1-OVRM10120F04.5

Sequence:


               
               TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACACACACACACACACACACAC
ACACACACACACACTCGTATTTTGTGCTGTCGTAAAACCCACGTGTCCAGCCGGGTGGCT
GCCAGAGCGTGGAGCGGTGGAACTGGGACGCGGCAGCGGCCGAGCCCAGCAGCCCGCCGC
GGCTCAGTCGGGCGCCCAGGTTCGCCCGTGCTGCCGCGCTCGGCATAACTGTTCTCACGC
CCTCCGCAGGCCTCCACGTCCCTGGCTTGCGGCCCCAGAGGGTCCCGGGCGGCGGGATCT
CTAGGGCTCTGCTCTCGCGCTGCCCAGGGGCATGTAGCGCACCGAAGGCGCACACTCTCC
CTCACGCTCACTGAGACACACGCACGCACCCACCAGCGGCTCGGAGTTCCCAGCTTGAGG
CGTCGGACATGCTGAAGCCCGGAGACCCCGGCGGATCGGCTTTTCTCAAAGTGGACCCAG
CTTATTTGCAGCACTGGCAGCAACTCTTCCCGCACAGCAGCGGCGGCCCGCTCAAGGGCG
GCGGCGCCGTGGGTCCCCTGGGCGCGCCGCAACCTCTCCAGCCGCCGCCGCCACAGGAGC
GCGCCGAGGCCCCGCCGGACAGCCTGCGTCCGCGGCCCTCCTCGCTCTCCTCCGCCTCCT
CCACTCCAGCTTCCTCCTCCACCTCGGCCTCGTCCGCCTCCTCCTGCGCTGCTGCCGCCG
CCGCCGCCGCGGCGCTGGCTGGTCTCTCGGCCCTGCCCGTGGCTCAGCTGCCGGTGTTCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACACACACACACACACACACAC
ACACACACACACACTCGTATTTTGTGCTGTCGTAAAACCCACGTGTCCAGCCGGGTGGCT
GCCAGAGCGTGGAGCGGTGGAACTGGGACGCGGCAGCGGCCGAGCCCAGCAGCCCGCCGC
GGCTCAGTCGGGCGCCCAGGTTCGCCCGTGCTGCCGCGCTCGGCATAACTGTTCTCACGC
CCTCCGCAGGCCTCCACGTCCCTGGCTTGCGGCCCCAGAGGGTCCCGGGCGGCGGGATCT
CTAGGGCTCTGCTCTCGCGCTGCCCAGGGGCATGTAGCGCACCGAAGGCGCACACTCTCC
CTCACGCTCACTGAGACACACGCACGCACCCACCAGCGGCTCGGAGTTCCCAGCTTGAGG
CGTCGGACATGCTGAAGCCCGGAGACCCCGGCGGATCGGCTTTTCTCAAAGTGGACCCAG
CTTATTTGCAGCACTGGCAGCAACTCTTCCCGCACAGCAGCGGCGGCCCGCTCAAGGGCG
GCGGCGCCGTGGGTCCCCTGGGCGCGCCGCAACCTCTCCAGCCGCCGCCGCCACAGGAGC
GCGCCGAGGCCCCGCCGGACAGCCTGCGTCCGCGGCCCTCCTCGCTCTCCTCCGCCTCCT
CCACTCCAGCTTCCTCCTCCACCTCGGCCTCGTCCGCCTCCTCCTGCGCTGCTGCCGCCG
CCGCCGCCGCGGCGCTGGCTGGTCTCTCGGCCCTGCCCGTGGCTCAGCTGCCGGTGTTCG

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               27-393, gnl|bosTau2|chr7 (24199152-24198786)
               

               
               27-393, gnl|Hg17|chr5 (122452674-122453093)
               

               
               27-393, gnl|Mm7|chr18 (53844202-53845339)
               


               
               406-717, gnl|bosTau2|chr7 (24198237-24197925)
               

               
               406-717, gnl|Hg17|chr5 (122453586-122453959)
               

               
               406-717, gnl|Mm7|chr18 (53845876-53846579)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               27-393, gnl|bosTau2|chr7 (24199152-24198786)
               

               
               27-393, gnl|Hg17|chr5 (122452674-122453093)
               

               
               27-393, gnl|Mm7|chr18 (53844202-53845339)
               


               
               406-717, gnl|bosTau2|chr7 (24198237-24197925)
               

               
               406-717, gnl|Hg17|chr5 (122453586-122453959)
               

               
               406-717, gnl|Mm7|chr18 (53845876-53846579)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               ctl (0.153069)
               

               
               spl (0.143184)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ctl (0.153069)
               

               
               spl (0.143184)

	27-393, gnl\|bosTau2\|chr7 (24199152-24198786)
	27-393, gnl\|Hg17\|chr5 (122452674-122453093)
	27-393, gnl\|Mm7\|chr18 (53844202-53845339)

	406-717, gnl\|bosTau2\|chr7 (24198237-24197925)
	406-717, gnl\|Hg17\|chr5 (122453586-122453959)
	406-717, gnl\|Mm7\|chr18 (53845876-53846579)