Non-Coding RNA Search

Ss1.1-Ova1-OVRM10123A01.5

Sequence:


               
               CTTAGATCAGCCCGAGAGGGACGTCGCCACCCACATGGACCAGATCCGAGTGAAGCTGCT
TCGGAAGCAGCACCGCATGGCGATCCCAAGTGGCGGACTCACAGAAATCTGTAGGAAGCC
CCTCTCTCCCGGATGCGTTTCTTCCGTGTCCGATTGGCTGGTTTCCATCGGTCTGCCCAT
GTACGCCAGCGCCCTCGCCGAGGCGGGGTTCAGCACACTGGGCCAGGTGCCTTCTCTCTC
CCCCACTTGCCTTCAGGAGGCCGGCATCACAGAGGAGAGACACATAAGCAAGCTGGTGTC
CGCAGCCAGACTCTTCAAACTGCCACCAGGCCCCGAGGCCATGTAGCCAGGCCCGACACG
GACCTCCCTGGACCAGAGCCACCCTTTCACTGTGTTTAAGATGCTGATGCAATTCCTCCT
TCGCTGGACTTGCAGACCAGATCCAAGAGAAAGGCCAGCGTGTGGCCGACAGAACTCGGA
ATCCTGGCACGGGACGGATGACCCTCTGTTCTCCAGAAAAGCCCCCTCCAGGACTGGGGT
GGTTCTCTGACCCCCAGGGAAAAGACAAGCACTTATTTTTGTTTTCAGGACACAGGAGAA
CCAAGATGCTGACTTGGTGCAAATGCGATGCCCACAGTCTGTCCTGGTGTGCTGGGAGAG
GGCGGGGGCAGAGGGAGGGGCAGCATGCCCTCGCCCTGGTGTCTGCCACCCTGCAGGGTA
CCCGAGGCCCAGACGGGACTCAGCCAGGCCAGGTGACAGACTCGGGGGTGATTGTACACT
GTCGACCAAGGCTCAGTGGTTCAAAAGTTAGAAAATCTGGCTGCACTAGAAAAAAGTCCT
ATTCTCCTTTAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTAGATCAGCCCGAGAGGGACGTCGCCACCCACATGGACCAGATCCGAGTGAAGCTGCT
TCGGAAGCAGCACCGCATGGCGATCCCAAGTGGCGGACTCACAGAAATCTGTAGGAAGCC
CCTCTCTCCCGGATGCGTTTCTTCCGTGTCCGATTGGCTGGTTTCCATCGGTCTGCCCAT
GTACGCCAGCGCCCTCGCCGAGGCGGGGTTCAGCACACTGGGCCAGGTGCCTTCTCTCTC
CCCCACTTGCCTTCAGGAGGCCGGCATCACAGAGGAGAGACACATAAGCAAGCTGGTGTC
CGCAGCCAGACTCTTCAAACTGCCACCAGGCCCCGAGGCCATGTAGCCAGGCCCGACACG
GACCTCCCTGGACCAGAGCCACCCTTTCACTGTGTTTAAGATGCTGATGCAATTCCTCCT
TCGCTGGACTTGCAGACCAGATCCAAGAGAAAGGCCAGCGTGTGGCCGACAGAACTCGGA
ATCCTGGCACGGGACGGATGACCCTCTGTTCTCCAGAAAAGCCCCCTCCAGGACTGGGGT
GGTTCTCTGACCCCCAGGGAAAAGACAAGCACTTATTTTTGTTTTCAGGACACAGGAGAA
CCAAGATGCTGACTTGGTGCAAATGCGATGCCCACAGTCTGTCCTGGTGTGCTGGGAGAG
GGCGGGGGCAGAGGGAGGGGCAGCATGCCCTCGCCCTGGTGTCTGCCACCCTGCAGGGTA
CCCGAGGCCCAGACGGGACTCAGCCAGGCCAGGTGACAGACTCGGGGGTGATTGTACACT
GTCGACCAAGGCTCAGTGGTTCAAAAGTTAGAAAATCTGGCTGCACTAGAAAAAAGTCCT
ATTCTCCTTTAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|26334159|dbj|BAC30797.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|26334159|dbj|BAC30797.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               281-400, - strand, RNAz p=0.612332

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               281-400, - strand, RNAz p=0.612332

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               82-852, gnl|bosTau2|chr9 (49812096-49812890)
               

               
               82-852, gnl|Hg17|chr6 (148911123-148911928)
               

               
               82-852, gnl|Mm7|chr10 (8425504-8424733)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               82-852, gnl|bosTau2|chr9 (49812096-49812890)
               

               
               82-852, gnl|Hg17|chr6 (148911123-148911928)
               

               
               82-852, gnl|Mm7|chr10 (8425504-8424733)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               jca (0.11396)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jca (0.11396)

	82-852, gnl\|bosTau2\|chr9 (49812096-49812890)
	82-852, gnl\|Hg17\|chr6 (148911123-148911928)
	82-852, gnl\|Mm7\|chr10 (8425504-8424733)