Non-Coding RNA Search

Ss1.1-Ova1-OVRM10123C05.5

Sequence:


               
               CCAGGTGCTGCTGCTTCTGCCGCGTGGACTTGACCGCCAGGATGGCCTGTCGATTCTTGT
ACTGCACCATCTGCAGCGTGATTTCGGCGTTCCACCCCTGGTCTTGCGGGCACCGAAAGT
CGATCTCCTTGCCCTCAGCCATCACCACAGTGAAGTACATATACTTGCCCTTGCGCTCTA
CGCAGTCCACGGTCTTCATGTTGGAAAAGTGCAATTCCTTGAGCTTGACTGGCGGCTCAA
GGCTGGCCACAGCGGGGCCCCCGGATTGGGACGGCTCAACCGACCCCTGACCGGGTTGTT
GCTGCTGCTGCTGCTGCTGGTGTTGCAGCTGCTTGGGCGGGATGAGCAGCAGCCCCTCCT
CGGTGAGAATGCAGCACTTTTTCTTCCAGAGCTGCAGCAACCCGTCGCTGCGCTTTTCCA
ACACACCCTCCTTCAGCGCCTTGCAGCCGCTGCTTTCCAACATCCTCCCGGCATAGGGCG
AGCCGCCGATCGGCTCGGCCTCTCTACTTCCAGCTGCCCTGGCCGGGGGCAGCAGCAGCA
GCCGCGCGCCGTCCTCGCCCCAGCGGCTCCCGCGGCCACCCGCCCGGAGCGCGCAAAAGA
GGCTAACGCGCAGGAAGCAGAGAGGCTGTGGCGGCGGCGGCTCGGGGTCGGGGCAGCAAG
GTAGCCGCGTCCTGATGCGCCACAAGGTCCCAGAGCTGCGAGCCGCCGGGCCTCTGCCTT
CCTCCTGCAAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCAGGTGCTGCTGCTTCTGCCGCGTGGACTTGACCGCCAGGATGGCCTGTCGATTCTTGT
ACTGCACCATCTGCAGCGTGATTTCGGCGTTCCACCCCTGGTCTTGCGGGCACCGAAAGT
CGATCTCCTTGCCCTCAGCCATCACCACAGTGAAGTACATATACTTGCCCTTGCGCTCTA
CGCAGTCCACGGTCTTCATGTTGGAAAAGTGCAATTCCTTGAGCTTGACTGGCGGCTCAA
GGCTGGCCACAGCGGGGCCCCCGGATTGGGACGGCTCAACCGACCCCTGACCGGGTTGTT
GCTGCTGCTGCTGCTGCTGGTGTTGCAGCTGCTTGGGCGGGATGAGCAGCAGCCCCTCCT
CGGTGAGAATGCAGCACTTTTTCTTCCAGAGCTGCAGCAACCCGTCGCTGCGCTTTTCCA
ACACACCCTCCTTCAGCGCCTTGCAGCCGCTGCTTTCCAACATCCTCCCGGCATAGGGCG
AGCCGCCGATCGGCTCGGCCTCTCTACTTCCAGCTGCCCTGGCCGGGGGCAGCAGCAGCA
GCCGCGCGCCGTCCTCGCCCCAGCGGCTCCCGCGGCCACCCGCCCGGAGCGCGCAAAAGA
GGCTAACGCGCAGGAAGCAGAGAGGCTGTGGCGGCGGCGGCTCGGGGTCGGGGCAGCAAG
GTAGCCGCGTCCTGATGCGCCACAAGGTCCCAGAGCTGCGAGCCGCCGGGCCTCTGCCTT
CCTCCTGCAAGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|57097161|ref|XP_539689.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57097161|ref|XP_539689.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               280-578, - strand, RNAz p=0.968783

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               280-578, - strand, RNAz p=0.968783

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-732, gnl|bosTau2|chr5 (1960935-1961681)
               

               
               1-732, gnl|Hg17|chr12 (74710882-74711628)
               

               
               1-732, gnl|Mm7|chr10 (110969273-110968545)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-732, gnl|bosTau2|chr5 (1960935-1961681)
               

               
               1-732, gnl|Hg17|chr12 (74710882-74711628)
               

               
               1-732, gnl|Mm7|chr10 (110969273-110968545)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               ecc (0.115035)
               

               
               cty (0.10408)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ecc (0.115035)
               

               
               cty (0.10408)

	1-732, gnl\|bosTau2\|chr5 (1960935-1961681)
	1-732, gnl\|Hg17\|chr12 (74710882-74711628)
	1-732, gnl\|Mm7\|chr10 (110969273-110968545)