Non-Coding RNA Search

Ss1.1-Ova1-OVRM10123H12.5

Sequence:


               
               ATGGTCCTGGACTGAATGGGCGCGAGCGCGGCGTCGGGGGCGGGCGGGGGCGCGGGGCCA
GGGACTGGCGGCCCGCGGGCTCCCGCTCCCTAGTATGCGGACGAAAGCGTCAGGCTGCAC
CGAGCGGCGTCCCCTGCAGCCGCAAACCGAGGCGGCGGAGGCGGCGGCACCTGCCGGCCG
AGCAATGCCAAGTGAGTCCAACTGTGTGAAGCTGAGGAGCGACCGTGCGAGGCCTTCCTT
GCCATGGTACCCCCGAGCCCAGAGCAAGATGAGAAGACCGAGCTTGCTGTTAAAAGACAT
CCTCAAGTGTATATTGCTTGTGTTTGGAGTGTGGATCCTTTATATCCTCAAGTTAAATTA
TACTACTGAAGAATGTGACATGAAAAAAATGCATTATGTGGACCCCGACCGCATAAAGAG
AGCACAGAAATACGCCCAGCAAGTCCTGCAGAAGGAGTGCCGGCCCCACTTTGCCAAGAG
GTCGATGGCACAGCTCTTCGGCCCCAGGTACAGCACGGACTTACCGCCTTTCGTGACAAA
AGCCCCCTTGGGGAGCAAGGCTGAGTCCAAGTACGACCCTCCTTTCGGATTCCGAAAGTT
CTCCAGTAAAGTCCAGGCCCTCTTGGAACTCTTGCCTGAGCATGACTTTCCTGAACACTT
GACAGCCAAGAGCTGTAGGCGTTGTGTGGTCATCGGAAGCGGTGGAATCCTCCACGGGCT
AGAGCTGGGCCCAGCCCTGAACCAGTTCGACGTGGTGATAAGGTTAAACAGTGCACCAGT
TGAAGGATATTCAGAGCATGTTGGAAATAAAACTACTATAAGGATGACTTACCCAGAGGG
GGCACCACTGTCTGACCTTGAATATTATTCCAATGACTTGTTTGTTGCTGTTTTATTTAA
GAGTGTTGACTTCAACTGGCTTCAGGCAATGGTCAAAAACGAAACCCTGCCATTTTGGGT
ACGACTCTTCTTTTGGAAGCAAGTGGCGGAAAAAATCCCACTACAGCCCAAACACTTCAG
GATTTTGAATCCAGTTATTATCAAAGAGACTGCCTTCGACATCCTTCAATACTCAGAGCC
TCAGTCAAGGTTCTGGGGCCGAGATAAGAACGTCCCCACGATTGGTGTCATCGCTGTGGT
CTTAGCCACACATCTGTGCGATGAAGTCAGTTTAGCAGGCTTTGGATACGACCTCAACCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGGTCCTGGACTGAATGGGCGCGAGCGCGGCGTCGGGGGCGGGCGGGGGCGCGGGGCCA
GGGACTGGCGGCCCGCGGGCTCCCGCTCCCTAGTATGCGGACGAAAGCGTCAGGCTGCAC
CGAGCGGCGTCCCCTGCAGCCGCAAACCGAGGCGGCGGAGGCGGCGGCACCTGCCGGCCG
AGCAATGCCAAGTGAGTCCAACTGTGTGAAGCTGAGGAGCGACCGTGCGAGGCCTTCCTT
GCCATGGTACCCCCGAGCCCAGAGCAAGATGAGAAGACCGAGCTTGCTGTTAAAAGACAT
CCTCAAGTGTATATTGCTTGTGTTTGGAGTGTGGATCCTTTATATCCTCAAGTTAAATTA
TACTACTGAAGAATGTGACATGAAAAAAATGCATTATGTGGACCCCGACCGCATAAAGAG
AGCACAGAAATACGCCCAGCAAGTCCTGCAGAAGGAGTGCCGGCCCCACTTTGCCAAGAG
GTCGATGGCACAGCTCTTCGGCCCCAGGTACAGCACGGACTTACCGCCTTTCGTGACAAA
AGCCCCCTTGGGGAGCAAGGCTGAGTCCAAGTACGACCCTCCTTTCGGATTCCGAAAGTT
CTCCAGTAAAGTCCAGGCCCTCTTGGAACTCTTGCCTGAGCATGACTTTCCTGAACACTT
GACAGCCAAGAGCTGTAGGCGTTGTGTGGTCATCGGAAGCGGTGGAATCCTCCACGGGCT
AGAGCTGGGCCCAGCCCTGAACCAGTTCGACGTGGTGATAAGGTTAAACAGTGCACCAGT
TGAAGGATATTCAGAGCATGTTGGAAATAAAACTACTATAAGGATGACTTACCCAGAGGG
GGCACCACTGTCTGACCTTGAATATTATTCCAATGACTTGTTTGTTGCTGTTTTATTTAA
GAGTGTTGACTTCAACTGGCTTCAGGCAATGGTCAAAAACGAAACCCTGCCATTTTGGGT
ACGACTCTTCTTTTGGAAGCAAGTGGCGGAAAAAATCCCACTACAGCCCAAACACTTCAG
GATTTTGAATCCAGTTATTATCAAAGAGACTGCCTTCGACATCCTTCAATACTCAGAGCC
TCAGTCAAGGTTCTGGGGCCGAGATAAGAACGTCCCCACGATTGGTGTCATCGCTGTGGT
CTTAGCCACACATCTGTGCGATGAAGTCAGTTTAGCAGGCTTTGGATACGACCTCAACCA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55597072|ref|XP_515593.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55597072|ref|XP_515593.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               988-1108, - strand, RNAz p=0.986209

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               988-1108, - strand, RNAz p=0.986209

Aligned organism(s): 18 entry(ies)

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Aligned organism(s): 18 entry(ies)

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               3-182, gnl|bosTau2|chr11 (34029989-34030165)
               

               
               3-182, gnl|canFam2|chr17 (42218934-42218742)
               

               
               3-182, gnl|dasNov1|scaffold_46968 (9431-9592)
               

               
               3-182, gnl|hg17|chr2 (86027566-86027751)
               

               
               3-182, gnl|Hg17|chr2 (86027778-86027605)
               

               
               3-182, gnl|loxAfr1|scaffold_38273 (22764-22942)
               

               
               3-182, gnl|mm7|chr6 (72115750-72115572)
               

               
               3-182, gnl|Mm7|chr6 (72115543-72115713)
               

               
               3-182, gnl|oryCun1|scaffold_210171 (35402-35594)
               

               
               3-182, gnl|panTro1|chr12 (88902226-88902411)
               

               
               3-182, gnl|rheMac2|chr13 (86472656-86472841)
               

               
               3-182, gnl|rn3|chr4 (105618074-105617896)
               


               
               417-764, gnl|bosTau2|chr11 (34075692-34076039)
               

               
               417-764, gnl|Hg17|chr2 (85986987-85986640)
               

               
               417-764, gnl|Mm7|chr6 (72160069-72160416)
               


               
               949-1108, gnl|bosTau2|chr11 (34081217-34081376)
               

               
               949-1108, gnl|Hg17|chr2 (85983336-85983177)
               

               
               949-1108, gnl|Mm7|chr6 (72166949-72167108)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-182, gnl|bosTau2|chr11 (34029989-34030165)
               

               
               3-182, gnl|canFam2|chr17 (42218934-42218742)
               

               
               3-182, gnl|dasNov1|scaffold_46968 (9431-9592)
               

               
               3-182, gnl|hg17|chr2 (86027566-86027751)
               

               
               3-182, gnl|Hg17|chr2 (86027778-86027605)
               

               
               3-182, gnl|loxAfr1|scaffold_38273 (22764-22942)
               

               
               3-182, gnl|mm7|chr6 (72115750-72115572)
               

               
               3-182, gnl|Mm7|chr6 (72115543-72115713)
               

               
               3-182, gnl|oryCun1|scaffold_210171 (35402-35594)
               

               
               3-182, gnl|panTro1|chr12 (88902226-88902411)
               

               
               3-182, gnl|rheMac2|chr13 (86472656-86472841)
               

               
               3-182, gnl|rn3|chr4 (105618074-105617896)
               


               
               417-764, gnl|bosTau2|chr11 (34075692-34076039)
               

               
               417-764, gnl|Hg17|chr2 (85986987-85986640)
               

               
               417-764, gnl|Mm7|chr6 (72160069-72160416)
               


               
               949-1108, gnl|bosTau2|chr11 (34081217-34081376)
               

               
               949-1108, gnl|Hg17|chr2 (85983336-85983177)
               

               
               949-1108, gnl|Mm7|chr6 (72166949-72167108)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               fcc (0.197785)
               

               
               nlu (0.191681)
               

               
               cli (0.152812)
               

               
               clu (0.119646)
               

               
               ebs (0.118301)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.197785)
               

               
               nlu (0.191681)
               

               
               cli (0.152812)
               

               
               clu (0.119646)
               

               
               ebs (0.118301)

	3-182, gnl\|bosTau2\|chr11 (34029989-34030165)
	3-182, gnl\|canFam2\|chr17 (42218934-42218742)
	3-182, gnl\|dasNov1\|scaffold_46968 (9431-9592)
	3-182, gnl\|hg17\|chr2 (86027566-86027751)
	3-182, gnl\|Hg17\|chr2 (86027778-86027605)
	3-182, gnl\|loxAfr1\|scaffold_38273 (22764-22942)
	3-182, gnl\|mm7\|chr6 (72115750-72115572)
	3-182, gnl\|Mm7\|chr6 (72115543-72115713)
	3-182, gnl\|oryCun1\|scaffold_210171 (35402-35594)
	3-182, gnl\|panTro1\|chr12 (88902226-88902411)
	3-182, gnl\|rheMac2\|chr13 (86472656-86472841)
	3-182, gnl\|rn3\|chr4 (105618074-105617896)

	417-764, gnl\|bosTau2\|chr11 (34075692-34076039)
	417-764, gnl\|Hg17\|chr2 (85986987-85986640)
	417-764, gnl\|Mm7\|chr6 (72160069-72160416)

	949-1108, gnl\|bosTau2\|chr11 (34081217-34081376)
	949-1108, gnl\|Hg17\|chr2 (85983336-85983177)
	949-1108, gnl\|Mm7\|chr6 (72166949-72167108)

	fcc (0.197785)
	nlu (0.191681)
	cli (0.152812)
	clu (0.119646)
	ebs (0.118301)