Non-Coding RNA Search

Ss1.1-Ova1-OVRM10124B10.5

Sequence:


               
               CCAAAGGCGAGGGCTTCGACGTCATGAAGTCCGGCGACGCCCGGGTGGCGCTGATTGGCT
TTCCCTCCGTGGGTAAGTCCACCTTCCTGAGTCTGATGACCTCCACCGCCAGCGAGGCTG
CGTCCTACGAGTTCACCACCCTGACCTGCATCCCGGGGGTCATCGAATACAAAGGCGCCA
ACATCCAGCTCCTGGACCTTCCGGGCATCATCGAGGGCGCCGCACAAGGGAAAGGCCGAG
GCCGACAGGTGATTGCAGTGGCTCGCACGGCGGACGTGGTCATCATGATGCTGGACGCCA
CCAAGGGAGAGGCGCAGAGGTCCCTGCTGGAGAAGGAGCTGGAGTCGGTGGGGATCCGCC
TCAACAAGCACAAGCCCAACATCTACTTCAAGCCCAAGAAAGGAGGCGGCATCTCCTTTA
ACTCGACGGTCACGCTGACCCAGTGCTCGGAGAAGCTGGTGCAGCTGATCCTGCACGAGT
ACAAGATCTTCAACGCGGAGGTGCTCTTCCGAGAAGACTGCTCCCCGGACGAGTTCATCG
ACGTGATTGTGGGCAACCGCGTGTACATGCCCTGCTTGTATGTTTACAACAAGATCGACC
AGATCTCCATGGAAGAAGTGGACCGCCTGGCCCGGAAGCCTGACAGCGTGGTCATCAGCT
GTGGCATGAAGCTCAACCTGGACTACCTGCTGGAGGTGCTCTGGGAGTACCTGGCCCTGA
CCTGCATCTACACCAAGAAGAGAGGACAGCGGCCGGACTTCACAGACGCCATCATCCTCC
GGAAAGGGGCCTCGGTGGAGCACGTGTGCCACCGCATCCACCGCTCGCTCGCCAGCCAGT
TCAAGTACGCGCTGGTGTGGGGCACCAGCACCAAGTACAGTCCCCAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCAAAGGCGAGGGCTTCGACGTCATGAAGTCCGGCGACGCCCGGGTGGCGCTGATTGGCT
TTCCCTCCGTGGGTAAGTCCACCTTCCTGAGTCTGATGACCTCCACCGCCAGCGAGGCTG
CGTCCTACGAGTTCACCACCCTGACCTGCATCCCGGGGGTCATCGAATACAAAGGCGCCA
ACATCCAGCTCCTGGACCTTCCGGGCATCATCGAGGGCGCCGCACAAGGGAAAGGCCGAG
GCCGACAGGTGATTGCAGTGGCTCGCACGGCGGACGTGGTCATCATGATGCTGGACGCCA
CCAAGGGAGAGGCGCAGAGGTCCCTGCTGGAGAAGGAGCTGGAGTCGGTGGGGATCCGCC
TCAACAAGCACAAGCCCAACATCTACTTCAAGCCCAAGAAAGGAGGCGGCATCTCCTTTA
ACTCGACGGTCACGCTGACCCAGTGCTCGGAGAAGCTGGTGCAGCTGATCCTGCACGAGT
ACAAGATCTTCAACGCGGAGGTGCTCTTCCGAGAAGACTGCTCCCCGGACGAGTTCATCG
ACGTGATTGTGGGCAACCGCGTGTACATGCCCTGCTTGTATGTTTACAACAAGATCGACC
AGATCTCCATGGAAGAAGTGGACCGCCTGGCCCGGAAGCCTGACAGCGTGGTCATCAGCT
GTGGCATGAAGCTCAACCTGGACTACCTGCTGGAGGTGCTCTGGGAGTACCTGGCCCTGA
CCTGCATCTACACCAAGAAGAGAGGACAGCGGCCGGACTTCACAGACGCCATCATCCTCC
GGAAAGGGGCCTCGGTGGAGCACGTGTGCCACCGCATCCACCGCTCGCTCGCCAGCCAGT
TCAAGTACGCGCTGGTGTGGGGCACCAGCACCAAGTACAGTCCCCAGC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|62460422|ref|NP_001014865.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|62460422|ref|NP_001014865.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               5-862, gnl|bosTau2|chr14 (36096025-36095165)
               

               
               5-862, gnl|Hg17|chr2 (20362279-20361363)
               

               
               5-862, gnl|Mm7|chr11 (3216777-3202354)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-862, gnl|bosTau2|chr14 (36096025-36095165)
               

               
               5-862, gnl|Hg17|chr2 (20362279-20361363)
               

               
               5-862, gnl|Mm7|chr11 (3216777-3202354)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               ebs (0.236602)
               

               
               nep (0.183925)
               

               
               fhi (0.169578)
               

               
               pla (0.133672)
               

               
               eru (0.120048)
               

               
               clu (0.119646)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.236602)
               

               
               nep (0.183925)
               

               
               fhi (0.169578)
               

               
               pla (0.133672)
               

               
               eru (0.120048)
               

               
               clu (0.119646)

	5-862, gnl\|bosTau2\|chr14 (36096025-36095165)
	5-862, gnl\|Hg17\|chr2 (20362279-20361363)
	5-862, gnl\|Mm7\|chr11 (3216777-3202354)

	ebs (0.236602)
	nep (0.183925)
	fhi (0.169578)
	pla (0.133672)
	eru (0.120048)
	clu (0.119646)