Ss1.1-Ova1-OVRM10125F01.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCGGCCGTCNGCTCCGGCCCGGATCGCTCCCGAGTTCTGGGCGCCCGTCCTGCGGGTTTC TCTGCTTCCTTGGCCGCGGAGGGGTCCTCTCCGCCTCGTGCGTCGGCAGGGCGCGGTTGC CCGCTCTGGGGTCCTTGCGGGACTGTCGGAAGCTTCGCCCGCTGCTGCCGCCGCCGCCGC CGGCGCCGCCCGCCGCCCTCCCCACCAGTAGGCCGATTCCCGTGGTATCATCCGGTAGGG AAATGGTCGTGCTTTCGGTGCCCGCCGAAGTCACTGTGATCCTGTTAGATATCGAAGGTA CCACAACCCCGATTGCTTTCGTGAAGGACATTCTGTTTCCTTACATCGAGGACCATGTTA AAGAGTATCTGCAGACGCACTGGGAAGAAGAGGAGTGCCAGCAGGATGTCAGCCTTTTGA GGAAACAGGCTGAAGAGGACGCCCATCTGGATGGGGCTGTTCCAATCCCTGCAGCATCTG GGGACGGGGAGGACGACCGGGAGCGGATGATCCAGGCCGTGGTGGATAATGTGTGCTGGC AGATGTCTCTGGACCGAAAGACCACGGCGCTGAAGCAGCCGCTAGGCCACATGTGGAGGG CGGCGTTCAAAGCTGGGCTCATGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCGGCCGTCNGCTCCGGCCCGGATCGCTCCCGAGTTCTGGGCGCCCGTCCTGCGGGTTTC TCTGCTTCCTTGGCCGCGGAGGGGTCCTCTCCGCCTCGTGCGTCGGCAGGGCGCGGTTGC CCGCTCTGGGGTCCTTGCGGGACTGTCGGAAGCTTCGCCCGCTGCTGCCGCCGCCGCCGC CGGCGCCGCCCGCCGCCCTCCCCACCAGTAGGCCGATTCCCGTGGTATCATCCGGTAGGG AAATGGTCGTGCTTTCGGTGCCCGCCGAAGTCACTGTGATCCTGTTAGATATCGAAGGTA CCACAACCCCGATTGCTTTCGTGAAGGACATTCTGTTTCCTTACATCGAGGACCATGTTA AAGAGTATCTGCAGACGCACTGGGAAGAAGAGGAGTGCCAGCAGGATGTCAGCCTTTTGA GGAAACAGGCTGAAGAGGACGCCCATCTGGATGGGGCTGTTCCAATCCCTGCAGCATCTG GGGACGGGGAGGACGACCGGGAGCGGATGATCCAGGCCGTGGTGGATAATGTGTGCTGGC AGATGTCTCTGGACCGAAAGACCACGGCGCTGAAGCAGCCGCTAGGCCACATGTGGAGGG CGGCGTTCAAAGCTGGGCTCATGA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 466-585, + strand, RNAz p=0.515936 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 466-585, + strand, RNAz p=0.515936 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of BC065815, + |
| Aligned organism(s): 36 entry(ies) | More info |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
| 14-327, gnl|bosTau2|chr6 (54039301-54038982) | |
| 14-327, gnl|Hg17|chr4 (83708933-83709246) | |
| 14-327, gnl|Mm7|chr5 (99254803-99255084) | |
| 427-624, gnl|bosTau2|chr6 (54010207-54010010) | |
| 427-624, gnl|canFam2|chr32 (9401582-9401456) | |
| 427-624, gnl|canFam2|chr32 (9401360-9401592) | |
| 427-624, gnl|danRer3|chrNA (31773745-31773617) | |
| 427-624, gnl|danRer3|chrNA (31773525-31773749) | |
| 427-624, gnl|dasNov1|scaffold_40464 (7446-7318) | |
| 427-624, gnl|dasNov1|scaffold_40464 (7241-7442) | |
| 427-624, gnl|echTel1|scaffold_220626 (326-450) | |
| 427-624, gnl|echTel1|scaffold_275628 (4145-3918) | |
| 427-624, gnl|fr1|chrUn (35956060-35955937) | |
| 427-624, gnl|fr1|chrUn (35955834-35956064) | |
| 427-624, gnl|galGal2|chr4 (46987411-46987201) | |
| 427-624, gnl|hg17|chr3 (190190267-190190395) | |
| 427-624, gnl|hg17|chr4 (83729356-83729584) | |
| 427-624, gnl|Hg17|chr4 (83729373-83729570) | |
| 427-624, gnl|loxAfr1|scaffold_34984 (5357-5278) | |
| 427-624, gnl|loxAfr1|scaffold_34984 (5200-5357) | |
| 427-624, gnl|mm7|chr5 (99275949-99275823) | |
| 427-624, gnl|mm7|chr5 (99275737-99275955) | |
| 427-624, gnl|Mm7|chr5 (99275753-99275941) | |
| 427-624, gnl|monDom2|scaffold_132 (2165822-2166049) | |
| 427-624, gnl|monDom2|scaffold_74 (1043199-1043085) | |
| 427-624, gnl|oryCun1|scaffold_174343 (39361-39477) | |
| 427-624, gnl|oryCun1|scaffold_188709 (8815-8583) | |
| 427-624, gnl|panTro1|chr2 (194275027-194275155) | |
| 427-624, gnl|panTro1|chr3 (49978413-49978185) | |
| 427-624, gnl|rheMac2|chr17 (33401175-33401378) | |
| 427-624, gnl|rheMac2|chr2 (181323955-181324083) | |
| 427-624, gnl|rn3|chr14 (10842368-10842494) | |
| 427-624, gnl|rn3|chr14 (10842580-10842362) | |
| 427-624, gnl|tetNig1|chrUn_random (1354190-1354062) | |
| 427-624, gnl|tetNig1|chrUn_random (1353964-1354194) | |
| 427-624, gnl|xenTro1|scaffold_867 (467321-467543) |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 14-327, gnl|bosTau2|chr6 (54039301-54038982) | |
| 14-327, gnl|Hg17|chr4 (83708933-83709246) | |
| 14-327, gnl|Mm7|chr5 (99254803-99255084) | |
| 427-624, gnl|bosTau2|chr6 (54010207-54010010) | |
| 427-624, gnl|canFam2|chr32 (9401582-9401456) | |
| 427-624, gnl|canFam2|chr32 (9401360-9401592) | |
| 427-624, gnl|danRer3|chrNA (31773745-31773617) | |
| 427-624, gnl|danRer3|chrNA (31773525-31773749) | |
| 427-624, gnl|dasNov1|scaffold_40464 (7446-7318) | |
| 427-624, gnl|dasNov1|scaffold_40464 (7241-7442) | |
| 427-624, gnl|echTel1|scaffold_220626 (326-450) | |
| 427-624, gnl|echTel1|scaffold_275628 (4145-3918) | |
| 427-624, gnl|fr1|chrUn (35956060-35955937) | |
| 427-624, gnl|fr1|chrUn (35955834-35956064) | |
| 427-624, gnl|galGal2|chr4 (46987411-46987201) | |
| 427-624, gnl|hg17|chr3 (190190267-190190395) | |
| 427-624, gnl|hg17|chr4 (83729356-83729584) | |
| 427-624, gnl|Hg17|chr4 (83729373-83729570) | |
| 427-624, gnl|loxAfr1|scaffold_34984 (5357-5278) | |
| 427-624, gnl|loxAfr1|scaffold_34984 (5200-5357) | |
| 427-624, gnl|mm7|chr5 (99275949-99275823) | |
| 427-624, gnl|mm7|chr5 (99275737-99275955) | |
| 427-624, gnl|Mm7|chr5 (99275753-99275941) | |
| 427-624, gnl|monDom2|scaffold_132 (2165822-2166049) | |
| 427-624, gnl|monDom2|scaffold_74 (1043199-1043085) | |
| 427-624, gnl|oryCun1|scaffold_174343 (39361-39477) | |
| 427-624, gnl|oryCun1|scaffold_188709 (8815-8583) | |
| 427-624, gnl|panTro1|chr2 (194275027-194275155) | |
| 427-624, gnl|panTro1|chr3 (49978413-49978185) | |
| 427-624, gnl|rheMac2|chr17 (33401175-33401378) | |
| 427-624, gnl|rheMac2|chr2 (181323955-181324083) | |
| 427-624, gnl|rn3|chr14 (10842368-10842494) | |
| 427-624, gnl|rn3|chr14 (10842580-10842362) | |
| 427-624, gnl|tetNig1|chrUn_random (1354190-1354062) | |
| 427-624, gnl|tetNig1|chrUn_random (1353964-1354194) | |
| 427-624, gnl|xenTro1|scaffold_867 (467321-467543) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| med (0.116252) |