Ss1.1-Ova1-OVRM10128E11.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTCACGTCCAGACCAAACGCGGGAACAATACAAGGACCGTGGATATCGTAGTATTAGAAA GCTCTGCCCAGTACTGTCCTCCAGAGAGGGTGGTGAACAATAAGGGGGATTTCAGATGGC CCAGAACGCTGGCGGGCATCACTGCCTACCTGCAGTGCGCTCGGAACAACCATGGCAGTG GGATCTATCCCGGAAACACACAGGATGAAAGAAAGGCTTGGCGCAGATGTGACAGAGGTG GCTTTTGGGCCGATGATGATTATTCTCGCTGCCAGTATGCAAACGATGTCACCAGAGTTC TTTATATGTTTAATCAGATGCCCCTCAATCTGACCAATGCTGTGGCTACTGCCCGACAAT TGTTGGCTTACACTGTGGAAGCTGCCAATTTTTCTGACAAGATGGATGTTATATTTGTGG CTGAAATGATAGAAAAATTTGGAAGATTTACCAAAGAGGAGAAGTCAAAAGAGCTGGGCG ATGTGATGGTCGACATTGCAAGTAACATCATGTTGGCTGATGAGCGTGTCCTGGGGCTGG CGCAGAGGGAAGCTAAAGCCTGCAGTAGAATTGTTCAGTGTCTACAGCGCATCGCCACGT ACCGACTAGCAAACGGAGCTCATGTGTACTCAACATATTCACCCAATATTGCTCTGGAAG CTTATGTCATCAAGGCTACTGGCTTCACCGGGATGACATGTACCGTGTTCCAGAAAGTGG CAGCCGCTGACCGCACAGGCCTTTCTGACTATGGGAGGCGGGATCCAGATGGAAACCTGG ATAAACAGCTGAGCTTTAAGTGCAACGTTTCAAATACGTTTTCAAGCCTGGCATTGAAGA ACACTGTTGTGGAGGCTTCTATTCAGCTTCCTCCTTCCCTTTTCTCACCAAAGCAAAAAC GAGAAGTCCGGCCAAGTGACGACTCTCTGTATAAACTTCAGCTCATCGCATTCCGCAATG GAAAGCTTTTTCCAGCCACCGGGAATTCGACCAATTTGGCCGACGACGGCAAACGGCGCA CCGTGGTTACCCCTGTGATTCTCACCAAGATAGATGGGGTGAACGTCGATACCCACCACA TCCCCGTCCACGTGACACTGCGTCGAATCGCGCATGGAGCAGATGCTGTGGCTGCCCAGT GGGATTTTGATTTGCTGAATGGACAAGGAGGCTGGAAGTCAGATGGGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTCACGTCCAGACCAAACGCGGGAACAATACAAGGACCGTGGATATCGTAGTATTAGAAA GCTCTGCCCAGTACTGTCCTCCAGAGAGGGTGGTGAACAATAAGGGGGATTTCAGATGGC CCAGAACGCTGGCGGGCATCACTGCCTACCTGCAGTGCGCTCGGAACAACCATGGCAGTG GGATCTATCCCGGAAACACACAGGATGAAAGAAAGGCTTGGCGCAGATGTGACAGAGGTG GCTTTTGGGCCGATGATGATTATTCTCGCTGCCAGTATGCAAACGATGTCACCAGAGTTC TTTATATGTTTAATCAGATGCCCCTCAATCTGACCAATGCTGTGGCTACTGCCCGACAAT TGTTGGCTTACACTGTGGAAGCTGCCAATTTTTCTGACAAGATGGATGTTATATTTGTGG CTGAAATGATAGAAAAATTTGGAAGATTTACCAAAGAGGAGAAGTCAAAAGAGCTGGGCG ATGTGATGGTCGACATTGCAAGTAACATCATGTTGGCTGATGAGCGTGTCCTGGGGCTGG CGCAGAGGGAAGCTAAAGCCTGCAGTAGAATTGTTCAGTGTCTACAGCGCATCGCCACGT ACCGACTAGCAAACGGAGCTCATGTGTACTCAACATATTCACCCAATATTGCTCTGGAAG CTTATGTCATCAAGGCTACTGGCTTCACCGGGATGACATGTACCGTGTTCCAGAAAGTGG CAGCCGCTGACCGCACAGGCCTTTCTGACTATGGGAGGCGGGATCCAGATGGAAACCTGG ATAAACAGCTGAGCTTTAAGTGCAACGTTTCAAATACGTTTTCAAGCCTGGCATTGAAGA ACACTGTTGTGGAGGCTTCTATTCAGCTTCCTCCTTCCCTTTTCTCACCAAAGCAAAAAC GAGAAGTCCGGCCAAGTGACGACTCTCTGTATAAACTTCAGCTCATCGCATTCCGCAATG GAAAGCTTTTTCCAGCCACCGGGAATTCGACCAATTTGGCCGACGACGGCAAACGGCGCA CCGTGGTTACCCCTGTGATTCTCACCAAGATAGATGGGGTGAACGTCGATACCCACCACA TCCCCGTCCACGTGACACTGCGTCGAATCGCGCATGGAGCAGATGCTGTGGCTGCCCAGT GGGATTTTGATTTGCTGAATGGACAAGGAGGCTGGAAGTCAGATGGGT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 58 entry(ies) | More info |
| Aligned organism(s): 58 entry(ies) | Help | Less info |
| 114-317, gnl|bosTau2|chr21 (38716815-38716612) | |
| 114-317, gnl|canFam2|chr3 (90210957-90210746) | |
| 114-317, gnl|danRer3|chr23 (24595960-24596168) | |
| 114-317, gnl|dasNov1|scaffold_192878 (551-340) | |
| 114-317, gnl|echTel1|scaffold_128421 (704-493) | |
| 114-317, gnl|fr1|chrUn (259042541-259042748) | |
| 114-317, gnl|galGal2|chr4 (74794752-74794541) | |
| 114-317, gnl|hg17|chr4 (22114327-22114538) | |
| 114-317, gnl|Hg17|chr4 (22114535-22114332) | |
| 114-317, gnl|loxAfr1|scaffold_16103 (50181-49970) | |
| 114-317, gnl|mm7|chr5 (49372783-49372994) | |
| 114-317, gnl|Mm7|chr5 (49372991-49372788) | |
| 114-317, gnl|monDom2|scaffold_10 (16725571-16725360) | |
| 114-317, gnl|oryCun1|scaffold_190365 (9186-9397) | |
| 114-317, gnl|panTro1|chr3 (22614991-22615202) | |
| 114-317, gnl|rheMac2|chr5 (17217251-17217462) | |
| 114-317, gnl|rn3|chr14 (65828411-65828200) | |
| 114-317, gnl|tetNig1|chrUn_random (85086598-85086805) | |
| 114-317, gnl|xenTro1|scaffold_54 (1650910-1650699) | |
| 472-635, gnl|bosTau2|chr21 (38704479-38704316) | |
| 472-635, gnl|Hg17|chr4 (22102246-22102083) | |
| 472-635, gnl|Mm7|chr5 (49363943-49363780) | |
| 636-839, gnl|bosTau2|chr21 (38701567-38701364) | |
| 636-839, gnl|canFam2|chr3 (90228522-90228272) | |
| 636-839, gnl|danRer3|chr6 (13631706-13631496) | |
| 636-839, gnl|dasNov1|scaffold_2649 (4578-4828) | |
| 636-839, gnl|echTel1|scaffold_311581 (3362-3112) | |
| 636-839, gnl|fr1|chrUn (259041831-259042013) | |
| 636-839, gnl|galGal2|chr4 (74801044-74800797) | |
| 636-839, gnl|hg17|chr4 (22098738-22098988) | |
| 636-839, gnl|Hg17|chr4 (22098981-22098778) | |
| 636-839, gnl|loxAfr1|scaffold_26658 (19417-19167) | |
| 636-839, gnl|mm7|chr5 (49361089-49361339) | |
| 636-839, gnl|Mm7|chr5 (49361332-49361129) | |
| 636-839, gnl|monDom2|scaffold_10 (16743599-16743355) | |
| 636-839, gnl|oryCun1|scaffold_139503 (3546-3296) | |
| 636-839, gnl|panTro1|chr3 (22598779-22599029) | |
| 636-839, gnl|rheMac2|chr5 (17201002-17201252) | |
| 636-839, gnl|rn3|chr14 (65840920-65840670) | |
| 636-839, gnl|xenTro1|scaffold_54 (1652961-1652695) | |
| 1052-1188, gnl|bosTau2|chr21 (38687986-38687850) | |
| 1052-1188, gnl|canFam2|chr3 (90237578-90237323) | |
| 1052-1188, gnl|danRer3|chr6 (13633763-13633532) | |
| 1052-1188, gnl|dasNov1|scaffold_60192 (7547-7802) | |
| 1052-1188, gnl|echTel1|scaffold_305901 (12808-13062) | |
| 1052-1188, gnl|fr1|chrUn (259041266-259041490) | |
| 1052-1188, gnl|galGal2|chr4 (74802635-74802389) | |
| 1052-1188, gnl|hg17|chr4 (22091049-22091304) | |
| 1052-1188, gnl|Hg17|chr4 (22091284-22091148) | |
| 1052-1188, gnl|loxAfr1|scaffold_64704 (4545-4290) | |
| 1052-1188, gnl|mm7|chr5 (49352573-49352828) | |
| 1052-1188, gnl|Mm7|chr5 (49352808-49352672) | |
| 1052-1188, gnl|monDom2|scaffold_10 (16751859-16751604) | |
| 1052-1188, gnl|panTro1|chr3 (22591071-22591326) | |
| 1052-1188, gnl|rheMac2|chr5 (17192974-17193229) | |
| 1052-1188, gnl|rn3|chr14 (65849643-65849388) | |
| 1052-1188, gnl|tetNig1|chrUn_random (85085302-85085524) | |
| 1052-1188, gnl|xenTro1|scaffold_54 (1656049-1655797) |
| Aligned organism(s): 58 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 114-317, gnl|bosTau2|chr21 (38716815-38716612) | |
| 114-317, gnl|canFam2|chr3 (90210957-90210746) | |
| 114-317, gnl|danRer3|chr23 (24595960-24596168) | |
| 114-317, gnl|dasNov1|scaffold_192878 (551-340) | |
| 114-317, gnl|echTel1|scaffold_128421 (704-493) | |
| 114-317, gnl|fr1|chrUn (259042541-259042748) | |
| 114-317, gnl|galGal2|chr4 (74794752-74794541) | |
| 114-317, gnl|hg17|chr4 (22114327-22114538) | |
| 114-317, gnl|Hg17|chr4 (22114535-22114332) | |
| 114-317, gnl|loxAfr1|scaffold_16103 (50181-49970) | |
| 114-317, gnl|mm7|chr5 (49372783-49372994) | |
| 114-317, gnl|Mm7|chr5 (49372991-49372788) | |
| 114-317, gnl|monDom2|scaffold_10 (16725571-16725360) | |
| 114-317, gnl|oryCun1|scaffold_190365 (9186-9397) | |
| 114-317, gnl|panTro1|chr3 (22614991-22615202) | |
| 114-317, gnl|rheMac2|chr5 (17217251-17217462) | |
| 114-317, gnl|rn3|chr14 (65828411-65828200) | |
| 114-317, gnl|tetNig1|chrUn_random (85086598-85086805) | |
| 114-317, gnl|xenTro1|scaffold_54 (1650910-1650699) | |
| 472-635, gnl|bosTau2|chr21 (38704479-38704316) | |
| 472-635, gnl|Hg17|chr4 (22102246-22102083) | |
| 472-635, gnl|Mm7|chr5 (49363943-49363780) | |
| 636-839, gnl|bosTau2|chr21 (38701567-38701364) | |
| 636-839, gnl|canFam2|chr3 (90228522-90228272) | |
| 636-839, gnl|danRer3|chr6 (13631706-13631496) | |
| 636-839, gnl|dasNov1|scaffold_2649 (4578-4828) | |
| 636-839, gnl|echTel1|scaffold_311581 (3362-3112) | |
| 636-839, gnl|fr1|chrUn (259041831-259042013) | |
| 636-839, gnl|galGal2|chr4 (74801044-74800797) | |
| 636-839, gnl|hg17|chr4 (22098738-22098988) | |
| 636-839, gnl|Hg17|chr4 (22098981-22098778) | |
| 636-839, gnl|loxAfr1|scaffold_26658 (19417-19167) | |
| 636-839, gnl|mm7|chr5 (49361089-49361339) | |
| 636-839, gnl|Mm7|chr5 (49361332-49361129) | |
| 636-839, gnl|monDom2|scaffold_10 (16743599-16743355) | |
| 636-839, gnl|oryCun1|scaffold_139503 (3546-3296) | |
| 636-839, gnl|panTro1|chr3 (22598779-22599029) | |
| 636-839, gnl|rheMac2|chr5 (17201002-17201252) | |
| 636-839, gnl|rn3|chr14 (65840920-65840670) | |
| 636-839, gnl|xenTro1|scaffold_54 (1652961-1652695) | |
| 1052-1188, gnl|bosTau2|chr21 (38687986-38687850) | |
| 1052-1188, gnl|canFam2|chr3 (90237578-90237323) | |
| 1052-1188, gnl|danRer3|chr6 (13633763-13633532) | |
| 1052-1188, gnl|dasNov1|scaffold_60192 (7547-7802) | |
| 1052-1188, gnl|echTel1|scaffold_305901 (12808-13062) | |
| 1052-1188, gnl|fr1|chrUn (259041266-259041490) | |
| 1052-1188, gnl|galGal2|chr4 (74802635-74802389) | |
| 1052-1188, gnl|hg17|chr4 (22091049-22091304) | |
| 1052-1188, gnl|Hg17|chr4 (22091284-22091148) | |
| 1052-1188, gnl|loxAfr1|scaffold_64704 (4545-4290) | |
| 1052-1188, gnl|mm7|chr5 (49352573-49352828) | |
| 1052-1188, gnl|Mm7|chr5 (49352808-49352672) | |
| 1052-1188, gnl|monDom2|scaffold_10 (16751859-16751604) | |
| 1052-1188, gnl|panTro1|chr3 (22591071-22591326) | |
| 1052-1188, gnl|rheMac2|chr5 (17192974-17193229) | |
| 1052-1188, gnl|rn3|chr14 (65849643-65849388) | |
| 1052-1188, gnl|tetNig1|chrUn_random (85085302-85085524) | |
| 1052-1188, gnl|xenTro1|scaffold_54 (1656049-1655797) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sto (0.179824) |