Non-Coding RNA Search

Ss1.1-Ova1-OVRM10129F11.5

Sequence:


               
               ATCATTCCTGTTGTAGGCAATGATGGAGCCCACATGGTCACCTTCCATTGTCCTCCTAAG
CCAGGCTATCTGCTTTTGCCATGGACAGTATAGTCGAGGGATTTCCAAAGTGGTGACCCA
TCACAACTTTGGTTGGTTCTCCCTTTTTCTTGTTCTCCATGAAGTGAAAGCAGAAGGACT
TTTTCAGACTGCCATAGGTAGCCTTCATTGCAGCTTTGTGGAAGGTTGTAACTAATACTC
CAAAACAGGCAGCTAGCACCGGGAAAGCCCATGAGGTTTTTCCCATGATTTTCTGAGGTT
CTTCTTTTCTATAATGTTGCTTTATTAGCAAATAAATTAAGAAAGCAGATATTACACTTT
AGCAGACAAGAACCATACCTATTTCTTACACAGGTAACAGGTACGTTGGGCTTCAAGAGT
GACACAGGTCTAGCCCCAGACTGTATAAGGATTCTGTTTAAACACTGAGCAGATGCCCCG
TTTAGACCCCCACCCAACACACACGCATATGCCAGCATTAGTTAGGGCTGGCTGTGAACT
CTGAGCCAGTCACTCCTGCAGGCTGCTAGAGATGGAACTTCTCATCCTGCCCTCTTTTAC
ATCCCTGTTCAGTCCTCCCCTTCATAGAAGCCTCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATCATTCCTGTTGTAGGCAATGATGGAGCCCACATGGTCACCTTCCATTGTCCTCCTAAG
CCAGGCTATCTGCTTTTGCCATGGACAGTATAGTCGAGGGATTTCCAAAGTGGTGACCCA
TCACAACTTTGGTTGGTTCTCCCTTTTTCTTGTTCTCCATGAAGTGAAAGCAGAAGGACT
TTTTCAGACTGCCATAGGTAGCCTTCATTGCAGCTTTGTGGAAGGTTGTAACTAATACTC
CAAAACAGGCAGCTAGCACCGGGAAAGCCCATGAGGTTTTTCCCATGATTTTCTGAGGTT
CTTCTTTTCTATAATGTTGCTTTATTAGCAAATAAATTAAGAAAGCAGATATTACACTTT
AGCAGACAAGAACCATACCTATTTCTTACACAGGTAACAGGTACGTTGGGCTTCAAGAGT
GACACAGGTCTAGCCCCAGACTGTATAAGGATTCTGTTTAAACACTGAGCAGATGCCCCG
TTTAGACCCCCACCCAACACACACGCATATGCCAGCATTAGTTAGGGCTGGCTGTGAACT
CTGAGCCAGTCACTCCTGCAGGCTGCTAGAGATGGAACTTCTCATCCTGCCCTCTTTTAC
ATCCCTGTTCAGTCCTCCCCTTCATAGAAGCCTCTT

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-631, gnl|bosTau2|chr22 (39242963-39242351)
               

               
               2-631, gnl|Hg17|chr3 (48761538-48760793)
               

               
               2-631, gnl|Mm7|chr9 (108458126-108458648)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-631, gnl|bosTau2|chr22 (39242963-39242351)
               

               
               2-631, gnl|Hg17|chr3 (48761538-48760793)
               

               
               2-631, gnl|Mm7|chr9 (108458126-108458648)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               nlu (0.191681)
               

               
               nco (0.161734)
               

               
               eli (0.151814)
               

               
               eep (0.122564)
               

               
               ldo (0.0970026)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nlu (0.191681)
               

               
               nco (0.161734)
               

               
               eli (0.151814)
               

               
               eep (0.122564)
               

               
               ldo (0.0970026)

	2-631, gnl\|bosTau2\|chr22 (39242963-39242351)
	2-631, gnl\|Hg17\|chr3 (48761538-48760793)
	2-631, gnl\|Mm7\|chr9 (108458126-108458648)

	nlu (0.191681)
	nco (0.161734)
	eli (0.151814)
	eep (0.122564)
	ldo (0.0970026)