Non-Coding RNA Search

Ss1.1-Ova1-OVRM10132G12.5

Sequence:


               
               ACCGGTGAGTGTTCATCTGCAGCCTTCCCTCTCCAGACAGAGCAGCTACACCAGTAATGG
CACCCTTCCCAGGACGGGACTAAAGAGGACACCGTCCTTAAAACCTGACGTGCCACCAAA
GCCTTCATTTGTTCCTCAGACCACATCTGTCAGACCACTGAACAAATACACGTACTAGGT
CTCAAATGTGCCCTTCCTCGAGTGGCTTTTATCCTGTCCATGTTGTTGAGAGGATGACGT
TGTAAGGGTACCTTAAAACAAGAGACTCACTCATAGTAAGAGAACCAAGTGGCCAAAGAA
ACTCTACCTAACTTTGGCAACATCAGAACTTGCCATATGTAGCTACTGCAGCAAGGCTTC
TGTGTACTTGCTTGAAAACAAAGGAAGGTGCTGGTCATTCCATTTCTTTTGTTTGAAGCT
AAAGAGATGTGTGGCTCCCAGGGGCCACCTGTCACCAGTTTAAAGAGCTGATACAGTGCT
CAGAAGAATCTGTGAGCAAATACTTGAAAATGGGTTCAACTTAGACTGCCATTCTGCGTG
GTCTTCCCATTAAATGTGAACATTTTAATATGTATGCATTCACCTTGCCTCTTGCACAAA
TGTCAAAAAAAAAAAAAAGGTAATGTCTCAAAGAAATGAACTTGTAGATTACCAAACGAT
TTGCTAAAAATTTTAGTCTTTGACCCAAACTGTAGCATTTTTTTCATGTGTGGCATTTTT
TTCATGCCACCAGTGATCTCTGTTGCGTGTGTATGCGTGTGTGTGTGCGCGCGCGCATGT
GTGTGCGTGCATGTATGCGTGTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACCGGTGAGTGTTCATCTGCAGCCTTCCCTCTCCAGACAGAGCAGCTACACCAGTAATGG
CACCCTTCCCAGGACGGGACTAAAGAGGACACCGTCCTTAAAACCTGACGTGCCACCAAA
GCCTTCATTTGTTCCTCAGACCACATCTGTCAGACCACTGAACAAATACACGTACTAGGT
CTCAAATGTGCCCTTCCTCGAGTGGCTTTTATCCTGTCCATGTTGTTGAGAGGATGACGT
TGTAAGGGTACCTTAAAACAAGAGACTCACTCATAGTAAGAGAACCAAGTGGCCAAAGAA
ACTCTACCTAACTTTGGCAACATCAGAACTTGCCATATGTAGCTACTGCAGCAAGGCTTC
TGTGTACTTGCTTGAAAACAAAGGAAGGTGCTGGTCATTCCATTTCTTTTGTTTGAAGCT
AAAGAGATGTGTGGCTCCCAGGGGCCACCTGTCACCAGTTTAAAGAGCTGATACAGTGCT
CAGAAGAATCTGTGAGCAAATACTTGAAAATGGGTTCAACTTAGACTGCCATTCTGCGTG
GTCTTCCCATTAAATGTGAACATTTTAATATGTATGCATTCACCTTGCCTCTTGCACAAA
TGTCAAAAAAAAAAAAAAGGTAATGTCTCAAAGAAATGAACTTGTAGATTACCAAACGAT
TTGCTAAAAATTTTAGTCTTTGACCCAAACTGTAGCATTTTTTTCATGTGTGGCATTTTT
TTCATGCCACCAGTGATCTCTGTTGCGTGTGTATGCGTGTGTGTGTGCGCGCGCGCATGT
GTGTGCGTGCATGTATGCGTGTGT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               1-199, - strand, RNAz p=0.708501
               

               
               278-476, + strand, RNAz p=0.925221

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-199, - strand, RNAz p=0.708501
               

               
               278-476, + strand, RNAz p=0.925221

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_153616, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_153616, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-794, gnl|bosTau2|chr10 (43493063-43492264)
               

               
               1-794, gnl|Hg17|chr15 (45851097-45851878)
               

               
               1-794, gnl|Mm7|chr2 (124405985-124406805)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-794, gnl|bosTau2|chr10 (43493063-43492264)
               

               
               1-794, gnl|Hg17|chr15 (45851097-45851878)
               

               
               1-794, gnl|Mm7|chr2 (124405985-124406805)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               sin (0.174948)
               

               
               cki (0.165235)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               pgl (0.118483)
               

               
               spc (0.113366)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sin (0.174948)
               

               
               cki (0.165235)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               pgl (0.118483)
               

               
               spc (0.113366)

	1-199, - strand, RNAz p=0.708501
	278-476, + strand, RNAz p=0.925221

	1-794, gnl\|bosTau2\|chr10 (43493063-43492264)
	1-794, gnl\|Hg17\|chr15 (45851097-45851878)
	1-794, gnl\|Mm7\|chr2 (124405985-124406805)

	sin (0.174948)
	cki (0.165235)
	ova (0.129132)
	sug (0.127291)
	pgl (0.118483)
	spc (0.113366)