Ss1.1-Ova1-OVRM10136C09.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTTTATAACCAGAACCGGGCCTGTTTGCTCCCGGAGAAGGGGCTCCCCGCCCCCGGCCCC TACTCCACCCCGCTCCGGACTCCGCTTTGGAATGGCTCAAACCACTCCATTGAGACCCAG AGCAGCAGTTCCGAAGAGATAGTGCCCAGCCCTCCCTCGCCGCCCCCCCTCCCCCGCATC TACAAGCCTTGCTTTGTCTGTCAAGACAAATCCTCAGGCTACCACTATGGGGTCAGCGCC TGTGAGGGCTGCAAGGGCTTCTTCCGCCGAAGCATCCAGAAGAACATGGTGTACACGTGT CACCGGGACAAGAACTGCATCATCAACAAGGTGACCCGGAACCGCTGCCAGTACTGCCGG CTGCAGAAGTGCTTTGAAGTGGGCATGTCCAAGGAGTCCGTGAGGAACGACCGGAACAAG AAGAAGAAGGAGGCGCCCAAGCCCGAGTGCTCCGAGAGCTACACGCTGACGCCGGAGGTG GGGGAGCTCATCGAGAAGGTGCGCAAAGCGCATCAGGAGACCTTCCCCGCCCTCTGCCAG CTGGGCAAATACACTACGAACAACAGCTCCGAGCAGCGCGTCTCTCTGGACATTGACCTC TGGGACAAGTTCAGTGAACTCTCCACCAAGTGCATCATTAAGACGGTGGAGTTCGCCAAG CAGCTGCCCGGCTTCACCACCCTCACCATCGCCGACCAGATCACCCTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTTTATAACCAGAACCGGGCCTGTTTGCTCCCGGAGAAGGGGCTCCCCGCCCCCGGCCCC TACTCCACCCCGCTCCGGACTCCGCTTTGGAATGGCTCAAACCACTCCATTGAGACCCAG AGCAGCAGTTCCGAAGAGATAGTGCCCAGCCCTCCCTCGCCGCCCCCCCTCCCCCGCATC TACAAGCCTTGCTTTGTCTGTCAAGACAAATCCTCAGGCTACCACTATGGGGTCAGCGCC TGTGAGGGCTGCAAGGGCTTCTTCCGCCGAAGCATCCAGAAGAACATGGTGTACACGTGT CACCGGGACAAGAACTGCATCATCAACAAGGTGACCCGGAACCGCTGCCAGTACTGCCGG CTGCAGAAGTGCTTTGAAGTGGGCATGTCCAAGGAGTCCGTGAGGAACGACCGGAACAAG AAGAAGAAGGAGGCGCCCAAGCCCGAGTGCTCCGAGAGCTACACGCTGACGCCGGAGGTG GGGGAGCTCATCGAGAAGGTGCGCAAAGCGCATCAGGAGACCTTCCCCGCCCTCTGCCAG CTGGGCAAATACACTACGAACAACAGCTCCGAGCAGCGCGTCTCTCTGGACATTGACCTC TGGGACAAGTTCAGTGAACTCTCCACCAAGTGCATCATTAAGACGGTGGAGTTCGCCAAG CAGCTGCCCGGCTTCACCACCCTCACCATCGCCGACCAGATCACCCTC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 1-106, - strand, RNAz p=0.6357 | |
| 439-558, - strand, RNAz p=0.95972 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1-106, - strand, RNAz p=0.6357 | |
| 439-558, - strand, RNAz p=0.95972 |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 1-106, gnl|bosTau2|chr19 (34320468-34320363) | |
| 1-106, gnl|Hg17|chr17 (35752540-35752645) | |
| 1-106, gnl|Mm7|chr11 (99070067-99070172) | |
| 212-387, gnl|bosTau2|chr11 (85109078-85109253) | |
| 212-387, gnl|canFam2|chr9 (53895064-53895259) | |
| 212-387, gnl|danRer3|chr20 (42532692-42532878) | |
| 212-387, gnl|dasNov1|scaffold_302213 (402-203) | |
| 212-387, gnl|echTel1|scaffold_220816 (2838-3042) | |
| 212-387, gnl|fr1|chrUn (63677042-63676853) | |
| 212-387, gnl|galGal2|chr17 (3090242-3090035) | |
| 212-387, gnl|hg17|chr9 (134526712-134526914) | |
| 212-387, gnl|Hg17|chr9 (134526719-134526900) | |
| 212-387, gnl|loxAfr1|scaffold_109298 (5460-5256) | |
| 212-387, gnl|mm7|chr2 (27749055-27749258) | |
| 212-387, gnl|Mm7|chr2 (27749069-27749244) | |
| 212-387, gnl|monDom2|scaffold_51 (11398688-11398890) | |
| 212-387, gnl|oryCun1|scaffold_166833 (9579-9365) | |
| 212-387, gnl|panTro1|chr11 (119402589-119402791) | |
| 212-387, gnl|rheMac2|chr15 (3890656-3890454) | |
| 212-387, gnl|rn3|chr3 (6671316-6671519) | |
| 212-387, gnl|tetNig1|chrUn_random (10505989-10506191) | |
| 212-387, gnl|xenTro1|scaffold_95 (1709172-1708970) | |
| 400-558, gnl|bosTau2|chr19 (34311423-34311265) | |
| 400-558, gnl|Hg17|chr17 (35761690-35761848) | |
| 400-558, gnl|Mm7|chr11 (99079198-99079356) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-106, gnl|bosTau2|chr19 (34320468-34320363) | |
| 1-106, gnl|Hg17|chr17 (35752540-35752645) | |
| 1-106, gnl|Mm7|chr11 (99070067-99070172) | |
| 212-387, gnl|bosTau2|chr11 (85109078-85109253) | |
| 212-387, gnl|canFam2|chr9 (53895064-53895259) | |
| 212-387, gnl|danRer3|chr20 (42532692-42532878) | |
| 212-387, gnl|dasNov1|scaffold_302213 (402-203) | |
| 212-387, gnl|echTel1|scaffold_220816 (2838-3042) | |
| 212-387, gnl|fr1|chrUn (63677042-63676853) | |
| 212-387, gnl|galGal2|chr17 (3090242-3090035) | |
| 212-387, gnl|hg17|chr9 (134526712-134526914) | |
| 212-387, gnl|Hg17|chr9 (134526719-134526900) | |
| 212-387, gnl|loxAfr1|scaffold_109298 (5460-5256) | |
| 212-387, gnl|mm7|chr2 (27749055-27749258) | |
| 212-387, gnl|Mm7|chr2 (27749069-27749244) | |
| 212-387, gnl|monDom2|scaffold_51 (11398688-11398890) | |
| 212-387, gnl|oryCun1|scaffold_166833 (9579-9365) | |
| 212-387, gnl|panTro1|chr11 (119402589-119402791) | |
| 212-387, gnl|rheMac2|chr15 (3890656-3890454) | |
| 212-387, gnl|rn3|chr3 (6671316-6671519) | |
| 212-387, gnl|tetNig1|chrUn_random (10505989-10506191) | |
| 212-387, gnl|xenTro1|scaffold_95 (1709172-1708970) | |
| 400-558, gnl|bosTau2|chr19 (34311423-34311265) | |
| 400-558, gnl|Hg17|chr17 (35761690-35761848) | |
| 400-558, gnl|Mm7|chr11 (99079198-99079356) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pty (0.142714) |