Ss1.1-Ova1-OVRM10140C04.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTTTAAGGAACCTGCGAAGTGTGGTCAGTCTGACGTTCCTACTGGGCATGACGTGGGGAT TTGCTTTCTTTGCCTGGGGACCGTTGACTGTCCCTTTCACATACCTCTTCTGCATCTTCA ACTCATTACAAGGCTTATTTATATTTATCTTCCACTGTGCTATGAAGGAGAATGTTCAGA AGCAGTGGAGGCGGCATCTTTGCTGTGGTAGATTTCGGTTAGCAGAGAACTCAGACTGGA GTAAGACAGCTACCAACATCATCAAGAAAAGTTCTGATAATATAGGAAAATCATTGTCCT CCAGCTCCATTGGTTCTAACTCAACCTACCTTACATCGAAATCTAAATCTAGCTCCACCA CCTACTTCAAAAGGAATAGCCACACAGATAATGTCTTCTAAGAGCATTCCTTCAACAAAA GTGGATCATTCAGACAGTGCTTCTATGGACAAGTCCTCATCAAAACTGACCTATGCTGAT GGAGAACAGACATCAATCATCCCTGTCCATCAGGTCATTGATAAGGTCAAGGGTTATTGC AGTGCTCATTCAGATAATTTCTATAAAAATATTATCATGTCAGACACCTTCAGCCACAGC ACAAAGTTTTAATATCTTTAATATATGAAAGGGGAATCAGTCTGCAGGAACGTGAAGATG TGCAAGCAGAGAGAACACTGACTAGCAGATGTAAAGTTGGAATTACCTAGGTAACGACAT ATATATGAAGAATGTGTTTTGTTAAGAAGGCTTTTGTGAAATTCAAAATCTATGTCTTTT CAGTGTGTTTCATGGGAGAGTTTCCAACATCACTAGAACTTTAGTTCCGAGAGCAGCATG ACTCAGTAGCTAGAGGGGACATGGTTTTTTAAATGTATAATTGAATTGACCAATCAGAAC TTAGACTAGGAGGTGGAATATTAAAATTAGAGGACAAGGGACAAGCAGCACTAGGGACAG GCCCTAGTTAGAGCTCCTTCACACCCCACCTGATAGCTAGGTTTGGATATGGCCGTTTGC TGTGTCATCTTTTTCCCAACAAAATCATACTAATACTTACAACTATTCTGGGCCTCGCAA GCCCCATCACAGGGCTAGTTTCTAGGAATGCAGTAGCATTTTCCTCTTTTTAAGTGAAAT TTCAACCACAGATACAAAAGAATATTTTATGTCAGACTCANAGTTTGGAAAGGAATTTTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTTTAAGGAACCTGCGAAGTGTGGTCAGTCTGACGTTCCTACTGGGCATGACGTGGGGAT TTGCTTTCTTTGCCTGGGGACCGTTGACTGTCCCTTTCACATACCTCTTCTGCATCTTCA ACTCATTACAAGGCTTATTTATATTTATCTTCCACTGTGCTATGAAGGAGAATGTTCAGA AGCAGTGGAGGCGGCATCTTTGCTGTGGTAGATTTCGGTTAGCAGAGAACTCAGACTGGA GTAAGACAGCTACCAACATCATCAAGAAAAGTTCTGATAATATAGGAAAATCATTGTCCT CCAGCTCCATTGGTTCTAACTCAACCTACCTTACATCGAAATCTAAATCTAGCTCCACCA CCTACTTCAAAAGGAATAGCCACACAGATAATGTCTTCTAAGAGCATTCCTTCAACAAAA GTGGATCATTCAGACAGTGCTTCTATGGACAAGTCCTCATCAAAACTGACCTATGCTGAT GGAGAACAGACATCAATCATCCCTGTCCATCAGGTCATTGATAAGGTCAAGGGTTATTGC AGTGCTCATTCAGATAATTTCTATAAAAATATTATCATGTCAGACACCTTCAGCCACAGC ACAAAGTTTTAATATCTTTAATATATGAAAGGGGAATCAGTCTGCAGGAACGTGAAGATG TGCAAGCAGAGAGAACACTGACTAGCAGATGTAAAGTTGGAATTACCTAGGTAACGACAT ATATATGAAGAATGTGTTTTGTTAAGAAGGCTTTTGTGAAATTCAAAATCTATGTCTTTT CAGTGTGTTTCATGGGAGAGTTTCCAACATCACTAGAACTTTAGTTCCGAGAGCAGCATG ACTCAGTAGCTAGAGGGGACATGGTTTTTTAAATGTATAATTGAATTGACCAATCAGAAC TTAGACTAGGAGGTGGAATATTAAAATTAGAGGACAAGGGACAAGCAGCACTAGGGACAG GCCCTAGTTAGAGCTCCTTCACACCCCACCTGATAGCTAGGTTTGGATATGGCCGTTTGC TGTGTCATCTTTTTCCCAACAAAATCATACTAATACTTACAACTATTCTGGGCCTCGCAA GCCCCATCACAGGGCTAGTTTCTAGGAATGCAGTAGCATTTTCCTCTTTTTAAGTGAAAT TTCAACCACAGATACAAAAGAATATTTTATGTCAGACTCANAGTTTGGAAAGGAATTTTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 231-346, - strand, RNAz p=0.855124 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 231-346, - strand, RNAz p=0.855124 |
| Aligned organism(s): 40 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
| 7-133, gnl|bosTau2|chr9 (45286717-45286591) | |
| 7-133, gnl|canFam2|chr1 (37128340-37128484) | |
| 7-133, gnl|danRer3|chr10 (32699639-32699783) | |
| 7-133, gnl|dasNov1|scaffold_2298 (5121-4982) | |
| 7-133, gnl|echTel1|scaffold_308284 (9565-9428) | |
| 7-133, gnl|fr1|chrUn (269884404-269884534) | |
| 7-133, gnl|galGal2|chr3 (51813407-51813263) | |
| 7-133, gnl|hg17|chr6 (142782810-142782954) | |
| 7-133, gnl|Hg17|chr6 (142782809-142782935) | |
| 7-133, gnl|loxAfr1|scaffold_71799 (3420-3564) | |
| 7-133, gnl|mm7|chr10 (14122845-14122701) | |
| 7-133, gnl|Mm7|chr10 (14122844-14122718) | |
| 7-133, gnl|monDom2|scaffold_0 (65736077-65735933) | |
| 7-133, gnl|oryCun1|scaffold_203676 (16575-16719) | |
| 7-133, gnl|panTro1|chr5 (145685960-145686104) | |
| 7-133, gnl|rheMac2|chr4 (121284772-121284628) | |
| 7-133, gnl|rn3|chr1 (9305168-9305024) | |
| 7-133, gnl|tetNig1|chrUn_random (125938053-125937923) | |
| 7-133, gnl|xenTro1|scaffold_41 (2571617-2571489) | |
| 231-399, gnl|bosTau2|chr9 (45270170-45270002) | |
| 231-399, gnl|canFam2|chr1 (37141726-37141892) | |
| 231-399, gnl|dasNov1|scaffold_254029 (527-693) | |
| 231-399, gnl|echTel1|scaffold_303552 (51139-51305) | |
| 231-399, gnl|fr1|chrUn (269886152-269886321) | |
| 231-399, gnl|galGal2|chr3 (51807349-51807184) | |
| 231-399, gnl|hg17|chr6 (142801036-142801202) | |
| 231-399, gnl|Hg17|chr6 (142801035-142801201) | |
| 231-399, gnl|loxAfr1|scaffold_19004 (30460-30294) | |
| 231-399, gnl|mm7|chr10 (14112126-14111960) | |
| 231-399, gnl|Mm7|chr10 (14112122-14111953) | |
| 231-399, gnl|monDom2|scaffold_0 (65720663-65720497) | |
| 231-399, gnl|oryCun1|scaffold_203676 (36497-36663) | |
| 231-399, gnl|panTro1|chr5 (145701615-145701781) | |
| 231-399, gnl|rheMac2|chr4 (121269566-121269400) | |
| 231-399, gnl|rn3|chr1 (9294731-9294565) | |
| 231-399, gnl|tetNig1|chrUn_random (125937195-125937029) | |
| 231-399, gnl|xenTro1|scaffold_41 (2569821-2569652) | |
| 426-1055, gnl|bosTau2|chr9 (45264343-45263711) | |
| 426-1055, gnl|Hg17|chr6 (142806159-142806756) | |
| 426-1055, gnl|Mm7|chr10 (14107739-14107146) |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 7-133, gnl|bosTau2|chr9 (45286717-45286591) | |
| 7-133, gnl|canFam2|chr1 (37128340-37128484) | |
| 7-133, gnl|danRer3|chr10 (32699639-32699783) | |
| 7-133, gnl|dasNov1|scaffold_2298 (5121-4982) | |
| 7-133, gnl|echTel1|scaffold_308284 (9565-9428) | |
| 7-133, gnl|fr1|chrUn (269884404-269884534) | |
| 7-133, gnl|galGal2|chr3 (51813407-51813263) | |
| 7-133, gnl|hg17|chr6 (142782810-142782954) | |
| 7-133, gnl|Hg17|chr6 (142782809-142782935) | |
| 7-133, gnl|loxAfr1|scaffold_71799 (3420-3564) | |
| 7-133, gnl|mm7|chr10 (14122845-14122701) | |
| 7-133, gnl|Mm7|chr10 (14122844-14122718) | |
| 7-133, gnl|monDom2|scaffold_0 (65736077-65735933) | |
| 7-133, gnl|oryCun1|scaffold_203676 (16575-16719) | |
| 7-133, gnl|panTro1|chr5 (145685960-145686104) | |
| 7-133, gnl|rheMac2|chr4 (121284772-121284628) | |
| 7-133, gnl|rn3|chr1 (9305168-9305024) | |
| 7-133, gnl|tetNig1|chrUn_random (125938053-125937923) | |
| 7-133, gnl|xenTro1|scaffold_41 (2571617-2571489) | |
| 231-399, gnl|bosTau2|chr9 (45270170-45270002) | |
| 231-399, gnl|canFam2|chr1 (37141726-37141892) | |
| 231-399, gnl|dasNov1|scaffold_254029 (527-693) | |
| 231-399, gnl|echTel1|scaffold_303552 (51139-51305) | |
| 231-399, gnl|fr1|chrUn (269886152-269886321) | |
| 231-399, gnl|galGal2|chr3 (51807349-51807184) | |
| 231-399, gnl|hg17|chr6 (142801036-142801202) | |
| 231-399, gnl|Hg17|chr6 (142801035-142801201) | |
| 231-399, gnl|loxAfr1|scaffold_19004 (30460-30294) | |
| 231-399, gnl|mm7|chr10 (14112126-14111960) | |
| 231-399, gnl|Mm7|chr10 (14112122-14111953) | |
| 231-399, gnl|monDom2|scaffold_0 (65720663-65720497) | |
| 231-399, gnl|oryCun1|scaffold_203676 (36497-36663) | |
| 231-399, gnl|panTro1|chr5 (145701615-145701781) | |
| 231-399, gnl|rheMac2|chr4 (121269566-121269400) | |
| 231-399, gnl|rn3|chr1 (9294731-9294565) | |
| 231-399, gnl|tetNig1|chrUn_random (125937195-125937029) | |
| 231-399, gnl|xenTro1|scaffold_41 (2569821-2569652) | |
| 426-1055, gnl|bosTau2|chr9 (45264343-45263711) | |
| 426-1055, gnl|Hg17|chr6 (142806159-142806756) | |
| 426-1055, gnl|Mm7|chr10 (14107739-14107146) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nco (0.161734) |