Non-Coding RNA Search

Ss1.1-Ova1-OVRM10147C04.5

Sequence:


               
               TGGAGACCAGCGTTGCATGGCCGGCACCTGCCCAGCGCCCTGGAGGCGGGACAGGAAGAG
ACACAGGGCTCAGGAGGCAGGCGGTGGACTCAGACGCCTGCTGCTCTGCCCGGCCACATC
CGGCGCCCTTGCCTTTTACTGCATTTTAATTAAGTTGTTGAATCAGATGGGCACCAGGAA
TCTGTAGGCTGTAACAGCCGGGGCAGGAACAGAAGCCTTGGAGCGGAACTAAACCAACAA
AGTCTGCCTCTTGAGCAGATCCAGGAGCCCCAGTCTTGCCGAAGGGCGTCTCTCAGGCGG
GGAGATGGGGGGCCCCCCTGCTCGGCCGGACCGAAGGAGAAGCTTGGCTCTGGGCCTGAG
AGCCATGGCCTGGGTCGTGAGCCACACTGGCGTTTTCTGGTGGCCTTGGCCTGGCCTGAC
TCCCAGCTCCAGCCCTATCCCAGAGGTTCTGAGCGCTCCGCCACCCCCGGGCTCTGTCTT
CCCATCCTTGTCTTGTGGGTTGGAAGTTAATCCTCGGTGGCGAAGGTCATAATGTCCTTG
AAGCTGGGAGAGAAGGCGAGAGGGTCCTAGGACCACGCAGAGGTCAGCAGTGCCCAACAG
AGTCTAGAATGGTGGAAAGAACCAGAAAAAAGAAGTTCCTGCTGTGGCTCAGTGGTAACG
AATCTGACCAGCATCCTCACGGAGACTAGTCGGGTTCGTTTCCACTGCACCACAATGGGA
ACTCCCCTGTGAAAGCATCTTTAGCACCTTGATTCTGGGGCTCCTACAGGTGGTCCTTAT
GTAAACATATACTGAGCAATTCTTATTTGCTAGCACCTTCAATAGCTCCCTATTACCTGC
AAGAAATGGAGCCTAAGCCCTTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGAGACCAGCGTTGCATGGCCGGCACCTGCCCAGCGCCCTGGAGGCGGGACAGGAAGAG
ACACAGGGCTCAGGAGGCAGGCGGTGGACTCAGACGCCTGCTGCTCTGCCCGGCCACATC
CGGCGCCCTTGCCTTTTACTGCATTTTAATTAAGTTGTTGAATCAGATGGGCACCAGGAA
TCTGTAGGCTGTAACAGCCGGGGCAGGAACAGAAGCCTTGGAGCGGAACTAAACCAACAA
AGTCTGCCTCTTGAGCAGATCCAGGAGCCCCAGTCTTGCCGAAGGGCGTCTCTCAGGCGG
GGAGATGGGGGGCCCCCCTGCTCGGCCGGACCGAAGGAGAAGCTTGGCTCTGGGCCTGAG
AGCCATGGCCTGGGTCGTGAGCCACACTGGCGTTTTCTGGTGGCCTTGGCCTGGCCTGAC
TCCCAGCTCCAGCCCTATCCCAGAGGTTCTGAGCGCTCCGCCACCCCCGGGCTCTGTCTT
CCCATCCTTGTCTTGTGGGTTGGAAGTTAATCCTCGGTGGCGAAGGTCATAATGTCCTTG
AAGCTGGGAGAGAAGGCGAGAGGGTCCTAGGACCACGCAGAGGTCAGCAGTGCCCAACAG
AGTCTAGAATGGTGGAAAGAACCAGAAAAAAGAAGTTCCTGCTGTGGCTCAGTGGTAACG
AATCTGACCAGCATCCTCACGGAGACTAGTCGGGTTCGTTTCCACTGCACCACAATGGGA
ACTCCCCTGTGAAAGCATCTTTAGCACCTTGATTCTGGGGCTCCTACAGGTGGTCCTTAT
GTAAACATATACTGAGCAATTCTTATTTGCTAGCACCTTCAATAGCTCCCTATTACCTGC
AAGAAATGGAGCCTAAGCCCTTCT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               27-143, - strand, RNAz p=0.802879
               

               
               223-483, - strand, RNAz p=0.976206

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               27-143, - strand, RNAz p=0.802879
               

               
               223-483, - strand, RNAz p=0.976206

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               284-393, - strand, RNAmicro p=0.995811
               

               
               44-136, + strand, RNAmicro p=0.907946

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               284-393, - strand, RNAmicro p=0.995811
               

               
               44-136, + strand, RNAmicro p=0.907946

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               27-483, gnl|bosTau2|chr3 (69056624-69057097)
               

               
               27-483, gnl|Hg17|chr1 (48178491-48178967)
               


               
               726-863, gnl|bosTau2|chr3 (69082098-69082235)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               27-483, gnl|bosTau2|chr3 (69056624-69057097)
               

               
               27-483, gnl|Hg17|chr1 (48178491-48178967)
               


               
               726-863, gnl|bosTau2|chr3 (69082098-69082235)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               col (0.195008)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               col (0.195008)

	27-143, - strand, RNAz p=0.802879
	223-483, - strand, RNAz p=0.976206

	284-393, - strand, RNAmicro p=0.995811
	44-136, + strand, RNAmicro p=0.907946

	27-483, gnl\|bosTau2\|chr3 (69056624-69057097)
	27-483, gnl\|Hg17\|chr1 (48178491-48178967)

	726-863, gnl\|bosTau2\|chr3 (69082098-69082235)