Non-Coding RNA Search

Ss1.1-Ova1-OVRM10147C06.5

Sequence:


               
               CTCGAACCAGCGCTAGCGGGCACGCGGCTCCTTTCCGCCAGCTTCCCGAGTGCCCAGCGC
CTGCCGGCTGCGAAGACGCCGTGGGCAGCGCCTCTGATTGAAAGCACGAACAATAGACAG
GTTCTTCTTAAGAGAAAAAGAAGAAATCTAAAAACGCTATGGCAAAGAGAATAAAAGCTA
AGCCCACTTCAGACAAACCTGGAAGTCCATATCGCTCTGTCACACACTTCGACTCGCTAG
CTGTCATAGACATCCCTGGCGCAGACACCCTGGACAAATTATTTGATCATGCCGTAGCCA
AGTTTGGCAAGAAGGACAGCCTTGGGACCAGGGAGGTCCTAAGCGAAGAAAACGAAATGC
AGCCAAATGGAAAGGTGTTTAAGAAGTTAATTCTTGGGAATTATAAATGGATGAGCTATC
TCGAAGTGAACCTCAGAGTGAATAACTTTGGTAGTGGACTCACTGCCCTGGGGCTAAAAC
CAAAGAGCACTATTGCCATTTTCTGTGAGACCAGGGCTGAATGGATGATTGCAGCACAGA
CCTGCTTCAAGTACAACTTTCCTCTTGTGACTTTATATGCCACACTTGGCAAAGAAGCTG
TAGTTCATGGGTTAAATGAATCTGAGGCTACCTATCTGATTACTAGTGTTGAACTTCTGG
AGAGTAAACTTAAGACCGCATTGGTAGATATTAACTGTGTGAAACATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCGAACCAGCGCTAGCGGGCACGCGGCTCCTTTCCGCCAGCTTCCCGAGTGCCCAGCGC
CTGCCGGCTGCGAAGACGCCGTGGGCAGCGCCTCTGATTGAAAGCACGAACAATAGACAG
GTTCTTCTTAAGAGAAAAAGAAGAAATCTAAAAACGCTATGGCAAAGAGAATAAAAGCTA
AGCCCACTTCAGACAAACCTGGAAGTCCATATCGCTCTGTCACACACTTCGACTCGCTAG
CTGTCATAGACATCCCTGGCGCAGACACCCTGGACAAATTATTTGATCATGCCGTAGCCA
AGTTTGGCAAGAAGGACAGCCTTGGGACCAGGGAGGTCCTAAGCGAAGAAAACGAAATGC
AGCCAAATGGAAAGGTGTTTAAGAAGTTAATTCTTGGGAATTATAAATGGATGAGCTATC
TCGAAGTGAACCTCAGAGTGAATAACTTTGGTAGTGGACTCACTGCCCTGGGGCTAAAAC
CAAAGAGCACTATTGCCATTTTCTGTGAGACCAGGGCTGAATGGATGATTGCAGCACAGA
CCTGCTTCAAGTACAACTTTCCTCTTGTGACTTTATATGCCACACTTGGCAAAGAAGCTG
TAGTTCATGGGTTAAATGAATCTGAGGCTACCTATCTGATTACTAGTGTTGAACTTCTGG
AGAGTAAACTTAAGACCGCATTGGTAGATATTAACTGTGTGAAACATA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q6A1A3_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q6A1A3_PIG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               273-390, + strand, RNAz p=0.764521

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               273-390, + strand, RNAz p=0.764521

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_004458, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_004458, +

Aligned organism(s): 21 entry(ies)

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Aligned organism(s): 21 entry(ies)

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               150-390, gnl|bosTau2|chrX (17136052-17136292)
               

               
               150-390, gnl|Hg17|chrX (108732746-108732506)
               

               
               150-390, gnl|Mm7|chrX (137015932-137015692)
               


               
               565-674, gnl|bosTau2|chrX (17137073-17137182)
               

               
               565-674, gnl|canFam2|chrX (85971881-85972003)
               

               
               565-674, gnl|danRer3|chr14 (28011824-28011946)
               

               
               565-674, gnl|dasNov1|scaffold_19264 (12163-12041)
               

               
               565-674, gnl|echTel1|scaffold_263256 (6937-7059)
               

               
               565-674, gnl|fr1|chrUn (74271582-74271465)
               

               
               565-674, gnl|galGal2|chr4 (13532702-13532580)
               

               
               565-674, gnl|hg17|chrX (108730633-108730755)
               

               
               565-674, gnl|Hg17|chrX (108730749-108730640)
               

               
               565-674, gnl|mm7|chrX (137013312-137013434)
               

               
               565-674, gnl|Mm7|chrX (137013428-137013319)
               

               
               565-674, gnl|monDom2|scaffold_131 (353414-353536)
               

               
               565-674, gnl|oryCun1|scaffold_125650 (34875-34753)
               

               
               565-674, gnl|panTro1|chrX_random (3601227-3601105)
               

               
               565-674, gnl|rheMac2|chrX (108391965-108392087)
               

               
               565-674, gnl|rn3|chrX (36258057-36257936)
               

               
               565-674, gnl|tetNig1|chr1 (3627997-3627875)
               

               
               565-674, gnl|xenTro1|scaffold_646 (745648-745527)

Aligned organism(s): 21 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               150-390, gnl|bosTau2|chrX (17136052-17136292)
               

               
               150-390, gnl|Hg17|chrX (108732746-108732506)
               

               
               150-390, gnl|Mm7|chrX (137015932-137015692)
               


               
               565-674, gnl|bosTau2|chrX (17137073-17137182)
               

               
               565-674, gnl|canFam2|chrX (85971881-85972003)
               

               
               565-674, gnl|danRer3|chr14 (28011824-28011946)
               

               
               565-674, gnl|dasNov1|scaffold_19264 (12163-12041)
               

               
               565-674, gnl|echTel1|scaffold_263256 (6937-7059)
               

               
               565-674, gnl|fr1|chrUn (74271582-74271465)
               

               
               565-674, gnl|galGal2|chr4 (13532702-13532580)
               

               
               565-674, gnl|hg17|chrX (108730633-108730755)
               

               
               565-674, gnl|Hg17|chrX (108730749-108730640)
               

               
               565-674, gnl|mm7|chrX (137013312-137013434)
               

               
               565-674, gnl|Mm7|chrX (137013428-137013319)
               

               
               565-674, gnl|monDom2|scaffold_131 (353414-353536)
               

               
               565-674, gnl|oryCun1|scaffold_125650 (34875-34753)
               

               
               565-674, gnl|panTro1|chrX_random (3601227-3601105)
               

               
               565-674, gnl|rheMac2|chrX (108391965-108392087)
               

               
               565-674, gnl|rn3|chrX (36258057-36257936)
               

               
               565-674, gnl|tetNig1|chr1 (3627997-3627875)
               

               
               565-674, gnl|xenTro1|scaffold_646 (745648-745527)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cbl (0.114797)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.114797)

	150-390, gnl\|bosTau2\|chrX (17136052-17136292)
	150-390, gnl\|Hg17\|chrX (108732746-108732506)
	150-390, gnl\|Mm7\|chrX (137015932-137015692)

	565-674, gnl\|bosTau2\|chrX (17137073-17137182)
	565-674, gnl\|canFam2\|chrX (85971881-85972003)
	565-674, gnl\|danRer3\|chr14 (28011824-28011946)
	565-674, gnl\|dasNov1\|scaffold_19264 (12163-12041)
	565-674, gnl\|echTel1\|scaffold_263256 (6937-7059)
	565-674, gnl\|fr1\|chrUn (74271582-74271465)
	565-674, gnl\|galGal2\|chr4 (13532702-13532580)
	565-674, gnl\|hg17\|chrX (108730633-108730755)
	565-674, gnl\|Hg17\|chrX (108730749-108730640)
	565-674, gnl\|mm7\|chrX (137013312-137013434)
	565-674, gnl\|Mm7\|chrX (137013428-137013319)
	565-674, gnl\|monDom2\|scaffold_131 (353414-353536)
	565-674, gnl\|oryCun1\|scaffold_125650 (34875-34753)
	565-674, gnl\|panTro1\|chrX_random (3601227-3601105)
	565-674, gnl\|rheMac2\|chrX (108391965-108392087)
	565-674, gnl\|rn3\|chrX (36258057-36257936)
	565-674, gnl\|tetNig1\|chr1 (3627997-3627875)
	565-674, gnl\|xenTro1\|scaffold_646 (745648-745527)