Non-Coding RNA Search

Ss1.1-Ova1-OVRM10147D07.5

Sequence:


               
               AAGGTTCTGCTTGCAGAATCAGGGGTTCCCAGCCAGGGAGCCTGCCTGCTAAACGCAGTG
GACCCTGAAGCTTTGTGGCATCTCGCATGGAGAGCCCTGCCGGCCGGACACCTGCCCCCG
GGGCACTGCCTTACTACGTGGCCTTCTCCCAGCTGCTGGGCCTGACTGTGGTGGCCGTGA
CTGGCGCCTGGCTCGGTGCGTACCGAGGAGGCATCGCCTGGGAGAGCGCCCTGCAGTTCA
ACGTGCACCCCCTCTGCATGATCATAGGCCTGGTCTTCCTGCAGGGGGACGCCCTGCTGG
TTTACCGCGTCTTCAGGAATGAGGCCAAACGCACCACCAAAATCCTGCACGGGCTGCTGC
ACGTCTTGGCCTTCGTCATCGCCCTGGTGGGCCTGGTGGCGGTGTTCGACTACCACAGGA
AGAAGGGCATCGCTGACCTGTACAGCCTGCACAGCTGGTGCGGCATCCTGGTCTTCGTTC
TCTTCCTCGCGCAGTGGCTCGTGGGCTTGGGCTTCTTCCTGTTCCCCGGAGCGTCGTTCT
CTCTGCGGAGCCGCTACCGCCCGCAGCACGTCTTCTTCGGCGCCGCCATCTTCCTCCTCT
CCGTGGGCACCGCTCTGCTGGGCCTGAAGGAGGCGCTGCTGTTCCAGCTCGGGACCAAGT
ACAGCGCGTTCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGGTTCTGCTTGCAGAATCAGGGGTTCCCAGCCAGGGAGCCTGCCTGCTAAACGCAGTG
GACCCTGAAGCTTTGTGGCATCTCGCATGGAGAGCCCTGCCGGCCGGACACCTGCCCCCG
GGGCACTGCCTTACTACGTGGCCTTCTCCCAGCTGCTGGGCCTGACTGTGGTGGCCGTGA
CTGGCGCCTGGCTCGGTGCGTACCGAGGAGGCATCGCCTGGGAGAGCGCCCTGCAGTTCA
ACGTGCACCCCCTCTGCATGATCATAGGCCTGGTCTTCCTGCAGGGGGACGCCCTGCTGG
TTTACCGCGTCTTCAGGAATGAGGCCAAACGCACCACCAAAATCCTGCACGGGCTGCTGC
ACGTCTTGGCCTTCGTCATCGCCCTGGTGGGCCTGGTGGCGGTGTTCGACTACCACAGGA
AGAAGGGCATCGCTGACCTGTACAGCCTGCACAGCTGGTGCGGCATCCTGGTCTTCGTTC
TCTTCCTCGCGCAGTGGCTCGTGGGCTTGGGCTTCTTCCTGTTCCCCGGAGCGTCGTTCT
CTCTGCGGAGCCGCTACCGCCCGCAGCACGTCTTCTTCGGCGCCGCCATCTTCCTCCTCT
CCGTGGGCACCGCTCTGCTGGGCCTGAAGGAGGCGCTGCTGTTCCAGCTCGGGACCAAGT
ACAGCGCGTTCG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|2498197|sp|Q95245|CY561_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|2498197|sp|Q95245|CY561_PIG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               125-642, - strand, RNAz p=0.649281

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               125-642, - strand, RNAz p=0.649281

Aligned organism(s): 21 entry(ies)

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Aligned organism(s): 21 entry(ies)

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               85-289, gnl|bosTau2|chr19 (40195817-40195613)
               

               
               85-289, gnl|Hg17|chr17 (58868642-58868441)
               

               
               85-289, gnl|Mm7|chr11 (106046870-106046672)
               


               
               291-391, gnl|bosTau2|chr19 (40194780-40194680)
               

               
               291-391, gnl|canFam2|chr9 (14590872-14591010)
               

               
               291-391, gnl|danRer3|chr3 (15606043-15606189)
               

               
               291-391, gnl|dasNov1|scaffold_13777 (34211-34073)
               

               
               291-391, gnl|echTel1|scaffold_310523 (63675-63815)
               

               
               291-391, gnl|fr1|chrUn (241652719-241652835)
               

               
               291-391, gnl|hg17|chr17 (58867130-58867267)
               

               
               291-391, gnl|Hg17|chr17 (58867246-58867146)
               

               
               291-391, gnl|loxAfr1|scaffold_12344 (96883-97020)
               

               
               291-391, gnl|mm7|chr11 (106045579-106045716)
               

               
               291-391, gnl|Mm7|chr11 (106045695-106045595)
               

               
               291-391, gnl|monDom2|scaffold_18 (36302864-36302726)
               

               
               291-391, gnl|panTro1|chr19 (46270020-46269883)
               

               
               291-391, gnl|rheMac2|chr16 (58962804-58962941)
               

               
               291-391, gnl|tetNig1|chrUn_random (37754459-37754361)
               


               
               483-653, gnl|bosTau2|chr19 (40194196-40194028)
               

               
               483-653, gnl|Hg17|chr17 (58866348-58866178)
               

               
               483-653, gnl|Mm7|chr11 (106044960-106044792)

Aligned organism(s): 21 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               85-289, gnl|bosTau2|chr19 (40195817-40195613)
               

               
               85-289, gnl|Hg17|chr17 (58868642-58868441)
               

               
               85-289, gnl|Mm7|chr11 (106046870-106046672)
               


               
               291-391, gnl|bosTau2|chr19 (40194780-40194680)
               

               
               291-391, gnl|canFam2|chr9 (14590872-14591010)
               

               
               291-391, gnl|danRer3|chr3 (15606043-15606189)
               

               
               291-391, gnl|dasNov1|scaffold_13777 (34211-34073)
               

               
               291-391, gnl|echTel1|scaffold_310523 (63675-63815)
               

               
               291-391, gnl|fr1|chrUn (241652719-241652835)
               

               
               291-391, gnl|hg17|chr17 (58867130-58867267)
               

               
               291-391, gnl|Hg17|chr17 (58867246-58867146)
               

               
               291-391, gnl|loxAfr1|scaffold_12344 (96883-97020)
               

               
               291-391, gnl|mm7|chr11 (106045579-106045716)
               

               
               291-391, gnl|Mm7|chr11 (106045695-106045595)
               

               
               291-391, gnl|monDom2|scaffold_18 (36302864-36302726)
               

               
               291-391, gnl|panTro1|chr19 (46270020-46269883)
               

               
               291-391, gnl|rheMac2|chr16 (58962804-58962941)
               

               
               291-391, gnl|tetNig1|chrUn_random (37754459-37754361)
               


               
               483-653, gnl|bosTau2|chr19 (40194196-40194028)
               

               
               483-653, gnl|Hg17|chr17 (58866348-58866178)
               

               
               483-653, gnl|Mm7|chr11 (106044960-106044792)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nmm (0.132802)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nmm (0.132802)

	85-289, gnl\|bosTau2\|chr19 (40195817-40195613)
	85-289, gnl\|Hg17\|chr17 (58868642-58868441)
	85-289, gnl\|Mm7\|chr11 (106046870-106046672)

	291-391, gnl\|bosTau2\|chr19 (40194780-40194680)
	291-391, gnl\|canFam2\|chr9 (14590872-14591010)
	291-391, gnl\|danRer3\|chr3 (15606043-15606189)
	291-391, gnl\|dasNov1\|scaffold_13777 (34211-34073)
	291-391, gnl\|echTel1\|scaffold_310523 (63675-63815)
	291-391, gnl\|fr1\|chrUn (241652719-241652835)
	291-391, gnl\|hg17\|chr17 (58867130-58867267)
	291-391, gnl\|Hg17\|chr17 (58867246-58867146)
	291-391, gnl\|loxAfr1\|scaffold_12344 (96883-97020)
	291-391, gnl\|mm7\|chr11 (106045579-106045716)
	291-391, gnl\|Mm7\|chr11 (106045695-106045595)
	291-391, gnl\|monDom2\|scaffold_18 (36302864-36302726)
	291-391, gnl\|panTro1\|chr19 (46270020-46269883)
	291-391, gnl\|rheMac2\|chr16 (58962804-58962941)
	291-391, gnl\|tetNig1\|chrUn_random (37754459-37754361)

	483-653, gnl\|bosTau2\|chr19 (40194196-40194028)
	483-653, gnl\|Hg17\|chr17 (58866348-58866178)
	483-653, gnl\|Mm7\|chr11 (106044960-106044792)