Non-Coding RNA Search

Ss1.1-Ova1-OVRM10147G01.5

Sequence:


               
               AATTACATCAACAAGGAAAGCAAATTGAAGAAGAGAGAAAAAAATTAAAGCGTAAAAGCC
TTACTAGAAATTCAGCATCTAGATATCTTGACACAAATGGGAGAAATTCAGAAAATATAT
TTTTTGAGAAGTTAAAGGAAGACAGTATCCCTGCTCCTCGCTCTGTTGGCAATATTAAAA
TCAACTTTACCCCTCGAGTATTCCCAACCGCCCTCCGGGAATCACAAGTAGCGGAAGAAG
AGGAGTGGCTACACAAACAAGCAGAGGCACGAAGGGCAATGAATACTGAAATTCCTGAGT
TTAGTGATTTAAAAGAAGAGGAAAAGAACCCAGAATGGTTGAAGGACAAAGGAAACAAGT
TGTTTGCAACAGAAAACTATTTGGCAGCTATTAATGCATACAACTTAGCCATAAGACTAA
ATAATAAGATTCCACTGTTGTATTTGGATCGGGCTGCTTGCCACCTAAAACTGAAAAACC
TACACAAAGCCATTGAAGATTCTTCTAAGGCATTAGAATTATTAACACCACCTGTTGCAG
ACAATGCTAATGCAAGAATGAAGGCACATGTACGACGTGGAACAGCATTCTGTCAACTAG
AATTGTATGTAGAAGGGTCTCCCTATCCTATCTGCTTTACAGAAGGATGAGGCCAAGTTG
AAAAAGTGGCTCAGAGAAGCCTGTTTGGCCAAGGAGAGAGCACTTATTACTGGCAAGCCA
AGTGCTTTTCAACAAACCTTGTCTATGTGGAGAATAAGGCAAACAATTTTCTGCATATGC
TATCTTGGGAAAAGGTTAGTAGGTCATCTCCCAGTAAGCTTGACAACAGGGGTACATTTC
ATTACCTTATTGAATTGATCTGGCTCAATCTCCTCTCAGACAAAGACCCAAGAGCACCCT
TAAGAGCTAACCCATCTCTGAGGATCAGAGTCATATTAACCAAGCTCAGGAGACTGAACA
AAACAGATTGCCTACTTATTATTAATTCATAATCGGAAACTGAAGATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATTACATCAACAAGGAAAGCAAATTGAAGAAGAGAGAAAAAAATTAAAGCGTAAAAGCC
TTACTAGAAATTCAGCATCTAGATATCTTGACACAAATGGGAGAAATTCAGAAAATATAT
TTTTTGAGAAGTTAAAGGAAGACAGTATCCCTGCTCCTCGCTCTGTTGGCAATATTAAAA
TCAACTTTACCCCTCGAGTATTCCCAACCGCCCTCCGGGAATCACAAGTAGCGGAAGAAG
AGGAGTGGCTACACAAACAAGCAGAGGCACGAAGGGCAATGAATACTGAAATTCCTGAGT
TTAGTGATTTAAAAGAAGAGGAAAAGAACCCAGAATGGTTGAAGGACAAAGGAAACAAGT
TGTTTGCAACAGAAAACTATTTGGCAGCTATTAATGCATACAACTTAGCCATAAGACTAA
ATAATAAGATTCCACTGTTGTATTTGGATCGGGCTGCTTGCCACCTAAAACTGAAAAACC
TACACAAAGCCATTGAAGATTCTTCTAAGGCATTAGAATTATTAACACCACCTGTTGCAG
ACAATGCTAATGCAAGAATGAAGGCACATGTACGACGTGGAACAGCATTCTGTCAACTAG
AATTGTATGTAGAAGGGTCTCCCTATCCTATCTGCTTTACAGAAGGATGAGGCCAAGTTG
AAAAAGTGGCTCAGAGAAGCCTGTTTGGCCAAGGAGAGAGCACTTATTACTGGCAAGCCA
AGTGCTTTTCAACAAACCTTGTCTATGTGGAGAATAAGGCAAACAATTTTCTGCATATGC
TATCTTGGGAAAAGGTTAGTAGGTCATCTCCCAGTAAGCTTGACAACAGGGGTACATTTC
ATTACCTTATTGAATTGATCTGGCTCAATCTCCTCTCAGACAAAGACCCAAGAGCACCCT
TAAGAGCTAACCCATCTCTGAGGATCAGAGTCATATTAACCAAGCTCAGGAGACTGAACA
AAACAGATTGCCTACTTATTATTAATTCATAATCGGAAACTGAAGATG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|12853648|dbj|BAB29805.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|12853648|dbj|BAB29805.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               138-963, - strand, RNAz p=0.655094
               

               
               614-726, - strand, RNAz p=0.990605

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               138-963, - strand, RNAz p=0.655094
               

               
               614-726, - strand, RNAz p=0.990605

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               99-254, gnl|bosTau2|chr10 (38813932-38813776)
               

               
               99-254, gnl|canFam2|chr30 (23826337-23826479)
               

               
               99-254, gnl|danRer3|chr11 (10514114-10513953)
               

               
               99-254, gnl|dasNov1|scaffold_200787 (4167-4309)
               

               
               99-254, gnl|echTel1|scaffold_321970 (39885-40027)
               

               
               99-254, gnl|galGal2|chr10 (8435470-8435336)
               

               
               99-254, gnl|hg17|chr15 (53529702-53529844)
               

               
               99-254, gnl|Hg17|chr15 (53529858-53529702)
               

               
               99-254, gnl|loxAfr1|scaffold_773 (138398-138256)
               

               
               99-254, gnl|mm7|chr9 (72996766-72996605)
               

               
               99-254, gnl|Mm7|chr9 (72996589-72996745)
               

               
               99-254, gnl|monDom2|scaffold_12 (33080752-33080894)
               

               
               99-254, gnl|oryCun1|scaffold_158055 (19566-19708)
               

               
               99-254, gnl|panTro1|chr16_random (15681882-15682024)
               

               
               99-254, gnl|rn3|chr8 (77726685-77726524)
               


               
               356-523, gnl|bosTau2|chr10 (38797170-38797002)
               

               
               356-523, gnl|Hg17|chr15 (53514548-53514377)
               

               
               356-523, gnl|Mm7|chr9 (73001531-73001703)
               


               
               614-1003, gnl|bosTau2|chr10 (38790349-38789955)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               99-254, gnl|bosTau2|chr10 (38813932-38813776)
               

               
               99-254, gnl|canFam2|chr30 (23826337-23826479)
               

               
               99-254, gnl|danRer3|chr11 (10514114-10513953)
               

               
               99-254, gnl|dasNov1|scaffold_200787 (4167-4309)
               

               
               99-254, gnl|echTel1|scaffold_321970 (39885-40027)
               

               
               99-254, gnl|galGal2|chr10 (8435470-8435336)
               

               
               99-254, gnl|hg17|chr15 (53529702-53529844)
               

               
               99-254, gnl|Hg17|chr15 (53529858-53529702)
               

               
               99-254, gnl|loxAfr1|scaffold_773 (138398-138256)
               

               
               99-254, gnl|mm7|chr9 (72996766-72996605)
               

               
               99-254, gnl|Mm7|chr9 (72996589-72996745)
               

               
               99-254, gnl|monDom2|scaffold_12 (33080752-33080894)
               

               
               99-254, gnl|oryCun1|scaffold_158055 (19566-19708)
               

               
               99-254, gnl|panTro1|chr16_random (15681882-15682024)
               

               
               99-254, gnl|rn3|chr8 (77726685-77726524)
               


               
               356-523, gnl|bosTau2|chr10 (38797170-38797002)
               

               
               356-523, gnl|Hg17|chr15 (53514548-53514377)
               

               
               356-523, gnl|Mm7|chr9 (73001531-73001703)
               


               
               614-1003, gnl|bosTau2|chr10 (38790349-38789955)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ret (0.128733)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ret (0.128733)

	138-963, - strand, RNAz p=0.655094
	614-726, - strand, RNAz p=0.990605

	99-254, gnl\|bosTau2\|chr10 (38813932-38813776)
	99-254, gnl\|canFam2\|chr30 (23826337-23826479)
	99-254, gnl\|danRer3\|chr11 (10514114-10513953)
	99-254, gnl\|dasNov1\|scaffold_200787 (4167-4309)
	99-254, gnl\|echTel1\|scaffold_321970 (39885-40027)
	99-254, gnl\|galGal2\|chr10 (8435470-8435336)
	99-254, gnl\|hg17\|chr15 (53529702-53529844)
	99-254, gnl\|Hg17\|chr15 (53529858-53529702)
	99-254, gnl\|loxAfr1\|scaffold_773 (138398-138256)
	99-254, gnl\|mm7\|chr9 (72996766-72996605)
	99-254, gnl\|Mm7\|chr9 (72996589-72996745)
	99-254, gnl\|monDom2\|scaffold_12 (33080752-33080894)
	99-254, gnl\|oryCun1\|scaffold_158055 (19566-19708)
	99-254, gnl\|panTro1\|chr16_random (15681882-15682024)
	99-254, gnl\|rn3\|chr8 (77726685-77726524)

	356-523, gnl\|bosTau2\|chr10 (38797170-38797002)
	356-523, gnl\|Hg17\|chr15 (53514548-53514377)
	356-523, gnl\|Mm7\|chr9 (73001531-73001703)

	614-1003, gnl\|bosTau2\|chr10 (38790349-38789955)