Non-Coding RNA Search

Ss1.1-Ova1-OVRM10147H07.5

Sequence:


               
               TTGGCGGCAAATCAGCAGGTTTATTGAGGTGGCGGCGGCGGCATCGCGGCAGGGGTATGG
GGAGGGGTCCACGAGGGGCCGGGCCTGGTCCTTCCCCACACACAGGGGCCGCACCGGGCA
GGCGGCTGTGCCCCCTCCTCCTCAGGGTCAGTCTGTCCGCAGCCAGGAGCCCTTCTCCTC
CACCTCCTTGGTCACCACCAGCAGCACCTCGCACAGGCCCTGAGCCAGCGCGGCCGCCAG
GAAGGCCCTGACGCTGTCCTCGTTCCCCAGGACCTCGGGCGCCCGCAGCTTGGAATCCAG
ATTGTAGTAGACGCCGCCCACCTGGCGCAGGGCCACCCAGTGCCGCCGGCGCAGTGGCAG
GGACAGCAGCCCCAGCGACACGGGCGAGGGCAGGTTCAGGATCAGCCCCAGCACCTGCGG
CAGCGCCAGCTGGGACAGGGGCCTCCTTCTGTCCCACCACACGGCGGCCAGGCCCTGCCC
CTGCAGGGCGGCCATGATCACGTTGACGTCATAGTTTCCGGTGCCCAGGAGGCTGCGATG
GGGGTTCAGCCGGGAATCTGGGGCCAACCTCTTGCAGATCTCATCGGCAGCCTCCTGGCT
GAAGAGCTGCTGCTGCAGGACGTTGTTGAGGGCGTGGACAGCACAGAGTTCCAGGCGTTG
CCGTTCGTGGTACACGGAGGGTGGGCTTGGCTGAGCTCCTGGGGCCTGGGACATGCCGTC
CTCGGCTCCTCCCCAACCGTAGCGCTAGTCCGTTGCCTGGCAACGCCCTTCACCCCGCCT
GCCTCTCTGTTCCTCCGAACCGGGGGTTCCCGCATCCCCCTGGGCGGTGGCTCTGGGCTC
CGTGAGCAAGGCGGGCAACAAACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGGCGGCAAATCAGCAGGTTTATTGAGGTGGCGGCGGCGGCATCGCGGCAGGGGTATGG
GGAGGGGTCCACGAGGGGCCGGGCCTGGTCCTTCCCCACACACAGGGGCCGCACCGGGCA
GGCGGCTGTGCCCCCTCCTCCTCAGGGTCAGTCTGTCCGCAGCCAGGAGCCCTTCTCCTC
CACCTCCTTGGTCACCACCAGCAGCACCTCGCACAGGCCCTGAGCCAGCGCGGCCGCCAG
GAAGGCCCTGACGCTGTCCTCGTTCCCCAGGACCTCGGGCGCCCGCAGCTTGGAATCCAG
ATTGTAGTAGACGCCGCCCACCTGGCGCAGGGCCACCCAGTGCCGCCGGCGCAGTGGCAG
GGACAGCAGCCCCAGCGACACGGGCGAGGGCAGGTTCAGGATCAGCCCCAGCACCTGCGG
CAGCGCCAGCTGGGACAGGGGCCTCCTTCTGTCCCACCACACGGCGGCCAGGCCCTGCCC
CTGCAGGGCGGCCATGATCACGTTGACGTCATAGTTTCCGGTGCCCAGGAGGCTGCGATG
GGGGTTCAGCCGGGAATCTGGGGCCAACCTCTTGCAGATCTCATCGGCAGCCTCCTGGCT
GAAGAGCTGCTGCTGCAGGACGTTGTTGAGGGCGTGGACAGCACAGAGTTCCAGGCGTTG
CCGTTCGTGGTACACGGAGGGTGGGCTTGGCTGAGCTCCTGGGGCCTGGGACATGCCGTC
CTCGGCTCCTCCCCAACCGTAGCGCTAGTCCGTTGCCTGGCAACGCCCTTCACCCCGCCT
GCCTCTCTGTTCCTCCGAACCGGGGGTTCCCGCATCCCCCTGGGCGGTGGCTCTGGGCTC
CGTGAGCAAGGCGGGCAACAAACA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               JOS2_HUMAN

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               JOS2_HUMAN

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               611-730, + strand, RNAz p=0.797937
               

               
               731-841, - strand, RNAz p=0.59034

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               611-730, + strand, RNAz p=0.797937
               

               
               731-841, - strand, RNAz p=0.59034

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               3' of NM_138334, -

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_138334, -

Aligned organism(s): 19 entry(ies)

More info

Aligned organism(s): 19 entry(ies)

Help | Less info


               
               216-444, gnl|bosTau2|chr18 (49311941-49312167)
               

               
               216-444, gnl|Hg17|chr19 (55701418-55701643)
               

               
               216-444, gnl|Mm7|chr7 (40647754-40647532)
               


               
               567-730, gnl|bosTau2|chr18 (49314900-49315063)
               

               
               567-730, gnl|canFam2|chr1 (109117475-109117344)
               

               
               567-730, gnl|danRer3|chr16 (7633598-7633485)
               

               
               567-730, gnl|dasNov1|scaffold_54750 (1293-1424)
               

               
               567-730, gnl|echTel1|scaffold_307000 (4267-4396)
               

               
               567-730, gnl|fr1|chrUn (274299292-274299173)
               

               
               567-730, gnl|hg17|chr19 (55705349-55705480)
               

               
               567-730, gnl|Hg17|chr19 (55705353-55705516)
               

               
               567-730, gnl|mm7|chr7 (40644901-40644770)
               

               
               567-730, gnl|Mm7|chr7 (40644895-40644732)
               

               
               567-730, gnl|panTro1|chr20 (53012714-53012845)
               

               
               567-730, gnl|rheMac2|chr19 (56717881-56718012)
               

               
               567-730, gnl|rn3|chr1 (95024366-95024235)
               

               
               567-730, gnl|tetNig1|chrUn_random (64266185-64266293)
               


               
               731-856, gnl|bosTau2|chr18 (49315524-49315656)
               

               
               731-856, gnl|Hg17|chr19 (55706143-55706271)

Aligned organism(s): 19 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               216-444, gnl|bosTau2|chr18 (49311941-49312167)
               

               
               216-444, gnl|Hg17|chr19 (55701418-55701643)
               

               
               216-444, gnl|Mm7|chr7 (40647754-40647532)
               


               
               567-730, gnl|bosTau2|chr18 (49314900-49315063)
               

               
               567-730, gnl|canFam2|chr1 (109117475-109117344)
               

               
               567-730, gnl|danRer3|chr16 (7633598-7633485)
               

               
               567-730, gnl|dasNov1|scaffold_54750 (1293-1424)
               

               
               567-730, gnl|echTel1|scaffold_307000 (4267-4396)
               

               
               567-730, gnl|fr1|chrUn (274299292-274299173)
               

               
               567-730, gnl|hg17|chr19 (55705349-55705480)
               

               
               567-730, gnl|Hg17|chr19 (55705353-55705516)
               

               
               567-730, gnl|mm7|chr7 (40644901-40644770)
               

               
               567-730, gnl|Mm7|chr7 (40644895-40644732)
               

               
               567-730, gnl|panTro1|chr20 (53012714-53012845)
               

               
               567-730, gnl|rheMac2|chr19 (56717881-56718012)
               

               
               567-730, gnl|rn3|chr1 (95024366-95024235)
               

               
               567-730, gnl|tetNig1|chrUn_random (64266185-64266293)
               


               
               731-856, gnl|bosTau2|chr18 (49315524-49315656)
               

               
               731-856, gnl|Hg17|chr19 (55706143-55706271)

Expressed library(ies): 13 entry(ies)

More info

Expressed library(ies): 13 entry(ies)

Help | Less info


               
               pla (0.66836)
               

               
               cbr (0.511902)
               

               
               cga (0.279096)
               

               
               jej (0.197844)
               

               
               fcc (0.197785)
               

               
               nlu (0.191681)
               

               
               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               hyp (0.142837)
               

               
               cov (0.132153)
               

               
               eep (0.122564)
               

               
               ebs (0.118301)
               

               
               nbm (0.0993246)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.66836)
               

               
               cbr (0.511902)
               

               
               cga (0.279096)
               

               
               jej (0.197844)
               

               
               fcc (0.197785)
               

               
               nlu (0.191681)
               

               
               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               hyp (0.142837)
               

               
               cov (0.132153)
               

               
               eep (0.122564)
               

               
               ebs (0.118301)
               

               
               nbm (0.0993246)

	611-730, + strand, RNAz p=0.797937
	731-841, - strand, RNAz p=0.59034

	216-444, gnl\|bosTau2\|chr18 (49311941-49312167)
	216-444, gnl\|Hg17\|chr19 (55701418-55701643)
	216-444, gnl\|Mm7\|chr7 (40647754-40647532)

	567-730, gnl\|bosTau2\|chr18 (49314900-49315063)
	567-730, gnl\|canFam2\|chr1 (109117475-109117344)
	567-730, gnl\|danRer3\|chr16 (7633598-7633485)
	567-730, gnl\|dasNov1\|scaffold_54750 (1293-1424)
	567-730, gnl\|echTel1\|scaffold_307000 (4267-4396)
	567-730, gnl\|fr1\|chrUn (274299292-274299173)
	567-730, gnl\|hg17\|chr19 (55705349-55705480)
	567-730, gnl\|Hg17\|chr19 (55705353-55705516)
	567-730, gnl\|mm7\|chr7 (40644901-40644770)
	567-730, gnl\|Mm7\|chr7 (40644895-40644732)
	567-730, gnl\|panTro1\|chr20 (53012714-53012845)
	567-730, gnl\|rheMac2\|chr19 (56717881-56718012)
	567-730, gnl\|rn3\|chr1 (95024366-95024235)
	567-730, gnl\|tetNig1\|chrUn_random (64266185-64266293)

	731-856, gnl\|bosTau2\|chr18 (49315524-49315656)
	731-856, gnl\|Hg17\|chr19 (55706143-55706271)

	pla (0.66836)
	cbr (0.511902)
	cga (0.279096)
	jej (0.197844)
	fcc (0.197785)
	nlu (0.191681)
	fbs (0.175346)
	fhi (0.169578)
	hyp (0.142837)
	cov (0.132153)
	eep (0.122564)
	ebs (0.118301)
	nbm (0.0993246)