Non-Coding RNA Search

Ss1.1-Ova1-OVRM10147H11.5

Sequence:


               
               ATCAACCCAAAATGTAACAGGGGTGAGAACAACTGAAAAGACTCAGGCCTTCTTTGAACA
TCGTACAGCATGCATTCTAAGTAAATCTTCTTAACATGGCTCATGAAAGCTTTACACAAG
ATGATAGAAGTGAAACCAATTCCTAAATTGTTTTTATAAAAGTGAAATTTGACAGCCAGA
AGAAGACCTGGCCCATCAAACTGGGCTGGGGGTCTGTGGGCTGCGGTGACAGCCGGCGGC
GAACCGCCTGGCCTGCGGAGGAGACTGCAGCATAGGGCACCGCCAGCCCAGGATGATGCA
AGCCCACGAGCTGTTCCGGTACTTTCGGATGCCAGAGCTGGTTGACTTCCAGCAGTACGT
GAGGACCCTCCCAACCAACACGCTCATGGGCTTCGGGGCGTTCGCGGCGCTCACCACCTT
CTGGTACGCCACGCGGCCGCGGGCCCTGAAGCCGCCATGCGACCTGGCCATGCAGTCGGT
GGAGGTGGCGGGCAGTGATGGCGCCCGGAGATCCGCGATCCTTGACAGTGATGAGCCCTT
GGCGTATTTCTATGATGATGTCAGAACGTTATACGAAGGTTTCCAGAGGGGCATACGGGT
GTCCAATAATGGCCCATGTTTAGGATCTCGGAAACCAGACCAACCCTATGAATGGCTTTC
ATACAAACAGGTGCAGGGAGACGCAGCGGGTGGTGCTTCAGCGCTGATTCACAAGGGCTT
CAAGGCAGGCCCAGAGAATTTCGTCGGCATCTTCGCTCAGAACAGGCCTGAGTGGGTGAT
TCAGGTCTTCAGGATGAACACGTGGCATCCAAATGGACATGTTTCACACACAGATTTGGG
GAAAACTAGTTAAGTAATTGAACTGGTGGATCAAAGTATTTTATTTTAGAACTGAAGTGG
GTGCATTGTGGAGTACAGAATAATCCCTTTTTTTGGCCCCACCCACAGCATGTGAAAGTT
CCCAGGCCAGGGATTGAACCCAAGCCACACTGGTGGCAATACCAAATCATTAACTGTTAG
GCCACCAGAGAACCTCCCCCCCCCTTTTTCGGTAATTTTTAAGATAAAATTCTAGAAATG
TGCTTGAAGCAGGTGACTCTTCTCCCAGGCTCTGAAGGAAGGTGGGATTTTTTTCCTCTT
TGTCCTGAGGGGGACTAGCCAAATGTAGACGCCCCAGGACAAAGTCACCCTCTCATTTTA
TGGACAAGAGACAGGCCCCAGGAAGGGATGGGACTCACCCTAGGTGGTAGCTAGTTGGTG
GCAGAACCAGGACCAGGACAGAGGTCCCCGCCACCTGGGGTAGGGGGTCTTCAGAGCATC
ACACTGATCCTGACCAGCATGGGGCTGGTGTGACCTTTAACCCCAAGGCCATCATAGAGA
GCAACACAGATGTTCAGAGACACACCTGTGTTACTGAACAAACAAAGCAAGCTGGGATCC
GGATGTTTTTATTCCTGTCACTCTGTGGTCCCAACAGATCCGTGGCTGCAAATGTTTCAG
TAGTAGTTTGTGAATGGCAGGTGGCAGAGCAGGAAAACTTGCTGTTTATTTTTAATTTCT
ATCATGATTACCCAAATCTCAGTGCCCCTGCTGCTACCTAGGACAGGCAGCAGCCCAAGA
ACACCGGGAGCCACCAGCAGTGTTCCCAGCACGGCCATCCAGGAAAGGGCTCTCTGCTGC
TGGGCCAGTCAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATCAACCCAAAATGTAACAGGGGTGAGAACAACTGAAAAGACTCAGGCCTTCTTTGAACA
TCGTACAGCATGCATTCTAAGTAAATCTTCTTAACATGGCTCATGAAAGCTTTACACAAG
ATGATAGAAGTGAAACCAATTCCTAAATTGTTTTTATAAAAGTGAAATTTGACAGCCAGA
AGAAGACCTGGCCCATCAAACTGGGCTGGGGGTCTGTGGGCTGCGGTGACAGCCGGCGGC
GAACCGCCTGGCCTGCGGAGGAGACTGCAGCATAGGGCACCGCCAGCCCAGGATGATGCA
AGCCCACGAGCTGTTCCGGTACTTTCGGATGCCAGAGCTGGTTGACTTCCAGCAGTACGT
GAGGACCCTCCCAACCAACACGCTCATGGGCTTCGGGGCGTTCGCGGCGCTCACCACCTT
CTGGTACGCCACGCGGCCGCGGGCCCTGAAGCCGCCATGCGACCTGGCCATGCAGTCGGT
GGAGGTGGCGGGCAGTGATGGCGCCCGGAGATCCGCGATCCTTGACAGTGATGAGCCCTT
GGCGTATTTCTATGATGATGTCAGAACGTTATACGAAGGTTTCCAGAGGGGCATACGGGT
GTCCAATAATGGCCCATGTTTAGGATCTCGGAAACCAGACCAACCCTATGAATGGCTTTC
ATACAAACAGGTGCAGGGAGACGCAGCGGGTGGTGCTTCAGCGCTGATTCACAAGGGCTT
CAAGGCAGGCCCAGAGAATTTCGTCGGCATCTTCGCTCAGAACAGGCCTGAGTGGGTGAT
TCAGGTCTTCAGGATGAACACGTGGCATCCAAATGGACATGTTTCACACACAGATTTGGG
GAAAACTAGTTAAGTAATTGAACTGGTGGATCAAAGTATTTTATTTTAGAACTGAAGTGG
GTGCATTGTGGAGTACAGAATAATCCCTTTTTTTGGCCCCACCCACAGCATGTGAAAGTT
CCCAGGCCAGGGATTGAACCCAAGCCACACTGGTGGCAATACCAAATCATTAACTGTTAG
GCCACCAGAGAACCTCCCCCCCCCTTTTTCGGTAATTTTTAAGATAAAATTCTAGAAATG
TGCTTGAAGCAGGTGACTCTTCTCCCAGGCTCTGAAGGAAGGTGGGATTTTTTTCCTCTT
TGTCCTGAGGGGGACTAGCCAAATGTAGACGCCCCAGGACAAAGTCACCCTCTCATTTTA
TGGACAAGAGACAGGCCCCAGGAAGGGATGGGACTCACCCTAGGTGGTAGCTAGTTGGTG
GCAGAACCAGGACCAGGACAGAGGTCCCCGCCACCTGGGGTAGGGGGTCTTCAGAGCATC
ACACTGATCCTGACCAGCATGGGGCTGGTGTGACCTTTAACCCCAAGGCCATCATAGAGA
GCAACACAGATGTTCAGAGACACACCTGTGTTACTGAACAAACAAAGCAAGCTGGGATCC
GGATGTTTTTATTCCTGTCACTCTGTGGTCCCAACAGATCCGTGGCTGCAAATGTTTCAG
TAGTAGTTTGTGAATGGCAGGTGGCAGAGCAGGAAAACTTGCTGTTTATTTTTAATTTCT
ATCATGATTACCCAAATCTCAGTGCCCCTGCTGCTACCTAGGACAGGCAGCAGCCCAAGA
ACACCGGGAGCCACCAGCAGTGTTCCCAGCACGGCCATCCAGGAAAGGGCTCTCTGCTGC
TGGGCCAGTCAC

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

Help | Less info


               
               301-420, - strand, RNAz p=0.524227
               

               
               381-497, - strand, RNAz p=0.890196
               

               
               1064-1300, + strand, RNAz p=0.976556

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               301-420, - strand, RNAz p=0.524227
               

               
               381-497, - strand, RNAz p=0.890196
               

               
               1064-1300, + strand, RNAz p=0.976556

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               300-461, + strand, RNAmicro p=0.994376

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               300-461, + strand, RNAmicro p=0.994376

Aligned organism(s): 20 entry(ies)

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Aligned organism(s): 20 entry(ies)

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               262-497, gnl|bosTau2|chr27 (10151129-10150894)
               

               
               262-497, gnl|canFam2|chr16 (48718821-48718613)
               

               
               262-497, gnl|danRer3|chr1 (13625556-13625763)
               

               
               262-497, gnl|dasNov1|scaffold_2481 (16910-17117)
               

               
               262-497, gnl|echTel1|scaffold_319155 (41143-40935)
               

               
               262-497, gnl|galGal2|chr4 (40053767-40053557)
               

               
               262-497, gnl|hg17|chr4 (186099616-186099824)
               

               
               262-497, gnl|Hg17|chr4 (186099851-186099616)
               

               
               262-497, gnl|loxAfr1|scaffold_1749 (32472-32680)
               

               
               262-497, gnl|mm7|chr8 (45270904-45270696)
               

               
               262-497, gnl|Mm7|chr8 (45270667-45270901)
               

               
               262-497, gnl|monDom2|scaffold_9 (66942661-66942869)
               

               
               262-497, gnl|oryCun1|scaffold_186012 (56584-56376)
               

               
               262-497, gnl|panTro1|chr3 (204306625-204306833)
               

               
               262-497, gnl|rheMac2|chr5 (176901656-176901864)
               

               
               262-497, gnl|rn3|chr16 (49081277-49081485)
               

               
               262-497, gnl|tetNig1|chr18 (5587567-5587365)
               

               
               262-497, gnl|xenTro1|scaffold_99 (1915277-1915481)
               


               
               1064-1633, gnl|bosTau2|chr27 (10136138-10135598)
               

               
               1064-1633, gnl|Hg17|chr4 (186079955-186079407)

Aligned organism(s): 20 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               262-497, gnl|bosTau2|chr27 (10151129-10150894)
               

               
               262-497, gnl|canFam2|chr16 (48718821-48718613)
               

               
               262-497, gnl|danRer3|chr1 (13625556-13625763)
               

               
               262-497, gnl|dasNov1|scaffold_2481 (16910-17117)
               

               
               262-497, gnl|echTel1|scaffold_319155 (41143-40935)
               

               
               262-497, gnl|galGal2|chr4 (40053767-40053557)
               

               
               262-497, gnl|hg17|chr4 (186099616-186099824)
               

               
               262-497, gnl|Hg17|chr4 (186099851-186099616)
               

               
               262-497, gnl|loxAfr1|scaffold_1749 (32472-32680)
               

               
               262-497, gnl|mm7|chr8 (45270904-45270696)
               

               
               262-497, gnl|Mm7|chr8 (45270667-45270901)
               

               
               262-497, gnl|monDom2|scaffold_9 (66942661-66942869)
               

               
               262-497, gnl|oryCun1|scaffold_186012 (56584-56376)
               

               
               262-497, gnl|panTro1|chr3 (204306625-204306833)
               

               
               262-497, gnl|rheMac2|chr5 (176901656-176901864)
               

               
               262-497, gnl|rn3|chr16 (49081277-49081485)
               

               
               262-497, gnl|tetNig1|chr18 (5587567-5587365)
               

               
               262-497, gnl|xenTro1|scaffold_99 (1915277-1915481)
               


               
               1064-1633, gnl|bosTau2|chr27 (10136138-10135598)
               

               
               1064-1633, gnl|Hg17|chr4 (186079955-186079407)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               ece (0.229305)
               

               
               med (0.116252)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)
               

               
               med (0.116252)

	301-420, - strand, RNAz p=0.524227
	381-497, - strand, RNAz p=0.890196
	1064-1300, + strand, RNAz p=0.976556

	262-497, gnl\|bosTau2\|chr27 (10151129-10150894)
	262-497, gnl\|canFam2\|chr16 (48718821-48718613)
	262-497, gnl\|danRer3\|chr1 (13625556-13625763)
	262-497, gnl\|dasNov1\|scaffold_2481 (16910-17117)
	262-497, gnl\|echTel1\|scaffold_319155 (41143-40935)
	262-497, gnl\|galGal2\|chr4 (40053767-40053557)
	262-497, gnl\|hg17\|chr4 (186099616-186099824)
	262-497, gnl\|Hg17\|chr4 (186099851-186099616)
	262-497, gnl\|loxAfr1\|scaffold_1749 (32472-32680)
	262-497, gnl\|mm7\|chr8 (45270904-45270696)
	262-497, gnl\|Mm7\|chr8 (45270667-45270901)
	262-497, gnl\|monDom2\|scaffold_9 (66942661-66942869)
	262-497, gnl\|oryCun1\|scaffold_186012 (56584-56376)
	262-497, gnl\|panTro1\|chr3 (204306625-204306833)
	262-497, gnl\|rheMac2\|chr5 (176901656-176901864)
	262-497, gnl\|rn3\|chr16 (49081277-49081485)
	262-497, gnl\|tetNig1\|chr18 (5587567-5587365)
	262-497, gnl\|xenTro1\|scaffold_99 (1915277-1915481)

	1064-1633, gnl\|bosTau2\|chr27 (10136138-10135598)
	1064-1633, gnl\|Hg17\|chr4 (186079955-186079407)