Non-Coding RNA Search

Ss1.1-Ova1-OVRM10149B09.5

Sequence:


               
               CTTGAACTTCCCCTACACTTTTTTTTTGTTTGTTTGGTTTTTTTGCCTTTTTCTTTCGCT
ATATCCTGGGCCAAGGATTGAATCTGAGCTGCATCTGCCTCAACACCAGATCCTTAAACC
ACTGCATGGGGCCGGAATCAAACCAACAACACCACAGAGACAAGTTGTATCATTAACTCA
CAGCACCAGAGCAGGAACTCCAAACTTTCTCATACTCATAAAAAAGAGAAGTTCCTTTCG
AAAGAGACTAGGGAATTCATTGTTTTAAGGCATGCCCTTCCCTTTGGGTAGAACCTCTGA
ACCCAGGCTTCTGAGCTGGGAGTGGGGATAAGAGTGCTTCTCTTAACTACACTGTTTGGT
TTTTTTTTTTTTTTTTTTAATTACTCAATGAATTTATTACATTTGTACTTGTACAATGAT
CATCACAGTCCAATTCTATAGGATTTCCATCCTACAACTCCAACACATTCCCCCACCCCC
GAACTGTCTCCTTTGGAAACCATGAGTTTTTCAAAGTCTGTGACTCAGTGTCTGTTCTGC
AAAGAAGTTCATTGTGTCCTTTTTCAGATTCCACATGTCAGTGAAAGCATTTGATGTTGG
TGTCTCATTGACTGACTGACTTCACTCAGAATGATAATTTTTAGGTCCATCCATGTTGCT
AAAAATGCCAGTATTTTGTTCCTTTTAATGGCTGAGTAATATTCCATTGTGGCTGTGGTG
TAGGCCAGTGGCTATGGCTATGATTAGACCCCTAGC------------------------
------------------------------------ACACACACACAAAGAAGTTCATTG
TGCCCTTTTTTTAGATTCCACATGTAAGTGAGAGCATTTAATGTTGGTGTCTCACTGTCT
GACGGACTTCACTTAGCATGGTAATTTCTAGGCCCCTCCATGTTGCTGCAAATGCCGTTA
TTTCTCTCCTTTTAATGGCTGAGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTGAACTTCCCCTACACTTTTTTTTTGTTTGTTTGGTTTTTTTGCCTTTTTCTTTCGCT
ATATCCTGGGCCAAGGATTGAATCTGAGCTGCATCTGCCTCAACACCAGATCCTTAAACC
ACTGCATGGGGCCGGAATCAAACCAACAACACCACAGAGACAAGTTGTATCATTAACTCA
CAGCACCAGAGCAGGAACTCCAAACTTTCTCATACTCATAAAAAAGAGAAGTTCCTTTCG
AAAGAGACTAGGGAATTCATTGTTTTAAGGCATGCCCTTCCCTTTGGGTAGAACCTCTGA
ACCCAGGCTTCTGAGCTGGGAGTGGGGATAAGAGTGCTTCTCTTAACTACACTGTTTGGT
TTTTTTTTTTTTTTTTTTAATTACTCAATGAATTTATTACATTTGTACTTGTACAATGAT
CATCACAGTCCAATTCTATAGGATTTCCATCCTACAACTCCAACACATTCCCCCACCCCC
GAACTGTCTCCTTTGGAAACCATGAGTTTTTCAAAGTCTGTGACTCAGTGTCTGTTCTGC
AAAGAAGTTCATTGTGTCCTTTTTCAGATTCCACATGTCAGTGAAAGCATTTGATGTTGG
TGTCTCATTGACTGACTGACTTCACTCAGAATGATAATTTTTAGGTCCATCCATGTTGCT
AAAAATGCCAGTATTTTGTTCCTTTTAATGGCTGAGTAATATTCCATTGTGGCTGTGGTG
TAGGCCAGTGGCTATGGCTATGATTAGACCCCTAGC------------------------
------------------------------------ACACACACACAAAGAAGTTCATTG
TGCCCTTTTTTTAGATTCCACATGTAAGTGAGAGCATTTAATGTTGGTGTCTCACTGTCT
GACGGACTTCACTTAGCATGGTAATTTCTAGGCCCCTCCATGTTGCTGCAAATGCCGTTA
TTTCTCTCCTTTTAATGGCTGAGT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|56492562|emb|CAI01941.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|56492562|emb|CAI01941.1|

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               431-727, gnl|bosTau2|chr4 (46258500-46258203)
               


               
               443-722, gnl|bosTau2|chr10 (7366801-7367077)
               


               
               472-721, gnl|bosTau2|chr10 (34554137-34554383)
               


               
               767-924, gnl|bosTau2|chr10 (49169169-49169326)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               431-727, gnl|bosTau2|chr4 (46258500-46258203)
               


               
               443-722, gnl|bosTau2|chr10 (7366801-7367077)
               


               
               472-721, gnl|bosTau2|chr10 (34554137-34554383)
               


               
               767-924, gnl|bosTau2|chr10 (49169169-49169326)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               fty (0.17584)
               

               
               ton (0.1755)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fty (0.17584)
               

               
               ton (0.1755)

	431-727, gnl\|bosTau2\|chr4 (46258500-46258203)

	443-722, gnl\|bosTau2\|chr10 (7366801-7367077)

	472-721, gnl\|bosTau2\|chr10 (34554137-34554383)

	767-924, gnl\|bosTau2\|chr10 (49169169-49169326)