Ss1.1-Ova1-OVRM10149B11.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCCTTCTCCAGCCCACTGATCCTAATATGGAATGCAGCAGGAAACCCATGATTTCCTGAC ACTCGGCAAGCTGGAGGAAGCAAGGGAAAACTCCATTAAAAAGCCCGGCTTTCCTCCATG TTAGATGTGAATTGGGAAATGGGGAAGATTTAGCAAAATTCCACTGTGTCTTCAGCCAAG CTTGGAGAACAGGAGACCAGAGTGGAAACCCTCAGGCGGTTGAAATTTCTAGACGGCCAG GAAGCCACTAGAATTCGGTGAAAATGAGGGTTTCTTAGTTCTAACTGATGGGGAAAGCAG ACAGATGCTTTTAATCATTCTCCCCCGTGTGTGTTACCTTTCTTGACCAGTATGGTGAGG GAGAGGGCATGTGCCAGACGCCTGGGACACGACCCCAGGTACCCAAAGTAAGACGGAGTG ATCCTCAGCCTGCCGCTGGCTTCAAGGGCTTGAGAGGAAGCAGGCGAAGCCCCGGCAGCA GCAGCCTCGGCAGCTGGAGCGGCGAGAATGAACTGCCAGGAGGGAAAGGATAGGAGCTGC GGCTGCGGCCACGAGGAGAAGAAGATGCTCAAGTGTGTGGTGGTGGGGGATGGCGCCGTG GGGAAGACCTGTCTGCTGATGAGCTACGCCAATGACGCCTTCCCAGAGGAGTACGTGCCC ACCGTGTTTGACCACTACGCAGTTACCGTGACAGTGGGAGGCAAGCAGCACTTGCTCGGC CTGTACGACACTGCAGGACAGGAGGACTATAACCAGCTGAGGCCGCTCTCCTACCCCAAC ACGGATGTGTTTTTGATCTGCTTCTCGGTGGTAAATCCTGCCTCTTACCACAACGTCCAG GAGGAGTGGGTCCCGGAGCTGAGGGACTGCATGCCTCACGTGCCTTACGTCCTCATAGGG ACCCAGATTGATCAGAGAGGAAGCTGCGGACACAGGGGACTGTCCTCCGCCCTGAGAGCC CTCCCAAGCACAGCACACGACCAGCCACCTGCCACGTCCTCCCCACCAGCCAAAAGAATC CACGGTGCACACCTACAAGAATGCCAAACCCAAACTCAGCTGCTGAATAGGTTGGAAAGA AAGGCCACCTTGCATTTTGCATCTCCCCCTCCCGGAACATGAAGCTGATAGGAAATCATC ACAGGAAAAATG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCCTTCTCCAGCCCACTGATCCTAATATGGAATGCAGCAGGAAACCCATGATTTCCTGAC ACTCGGCAAGCTGGAGGAAGCAAGGGAAAACTCCATTAAAAAGCCCGGCTTTCCTCCATG TTAGATGTGAATTGGGAAATGGGGAAGATTTAGCAAAATTCCACTGTGTCTTCAGCCAAG CTTGGAGAACAGGAGACCAGAGTGGAAACCCTCAGGCGGTTGAAATTTCTAGACGGCCAG GAAGCCACTAGAATTCGGTGAAAATGAGGGTTTCTTAGTTCTAACTGATGGGGAAAGCAG ACAGATGCTTTTAATCATTCTCCCCCGTGTGTGTTACCTTTCTTGACCAGTATGGTGAGG GAGAGGGCATGTGCCAGACGCCTGGGACACGACCCCAGGTACCCAAAGTAAGACGGAGTG ATCCTCAGCCTGCCGCTGGCTTCAAGGGCTTGAGAGGAAGCAGGCGAAGCCCCGGCAGCA GCAGCCTCGGCAGCTGGAGCGGCGAGAATGAACTGCCAGGAGGGAAAGGATAGGAGCTGC GGCTGCGGCCACGAGGAGAAGAAGATGCTCAAGTGTGTGGTGGTGGGGGATGGCGCCGTG GGGAAGACCTGTCTGCTGATGAGCTACGCCAATGACGCCTTCCCAGAGGAGTACGTGCCC ACCGTGTTTGACCACTACGCAGTTACCGTGACAGTGGGAGGCAAGCAGCACTTGCTCGGC CTGTACGACACTGCAGGACAGGAGGACTATAACCAGCTGAGGCCGCTCTCCTACCCCAAC ACGGATGTGTTTTTGATCTGCTTCTCGGTGGTAAATCCTGCCTCTTACCACAACGTCCAG GAGGAGTGGGTCCCGGAGCTGAGGGACTGCATGCCTCACGTGCCTTACGTCCTCATAGGG ACCCAGATTGATCAGAGAGGAAGCTGCGGACACAGGGGACTGTCCTCCGCCCTGAGAGCC CTCCCAAGCACAGCACACGACCAGCCACCTGCCACGTCCTCCCCACCAGCCAAAAGAATC CACGGTGCACACCTACAAGAATGCCAAACCCAAACTCAGCTGCTGAATAGGTTGGAAAGA AAGGCCACCTTGCATTTTGCATCTCCCCCTCCCGGAACATGAAGCTGATAGGAAATCATC ACAGGAAAAATG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 564-685, + strand, RNAz p=0.992995 | |
| 571-685, - strand, RNAz p=0.782393 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 564-685, + strand, RNAz p=0.992995 | |
| 571-685, - strand, RNAz p=0.782393 |
| Aligned organism(s): 40 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
| 558-919, gnl|bosTau2|chr15 (32927005-32926644) | |
| 558-919, gnl|Hg17|chr11 (3805945-3805584) | |
| 558-919, gnl|Mm7|chr7 (98286344-98285983) | |
| 564-685, gnl|bosTau2|chr11 (23105029-23104908) | |
| 564-685, gnl|canFam2|chr1 (31090333-31090219) | |
| 564-685, gnl|danRer3|chr12 (23201886-23202032) | |
| 564-685, gnl|dasNov1|scaffold_63091 (6807-6946) | |
| 564-685, gnl|echTel1|scaffold_270982 (3730-3602) | |
| 564-685, gnl|fr1|chrUn (145119960-145120096) | |
| 564-685, gnl|hg17|chr2 (46681837-46681991) | |
| 564-685, gnl|Hg17|chr2 (46681860-46681981) | |
| 564-685, gnl|loxAfr1|scaffold_69093 (1990-1836) | |
| 564-685, gnl|mm7|chr17 (85266048-85266202) | |
| 564-685, gnl|Mm7|chr17 (85266071-85266192) | |
| 564-685, gnl|monDom2|scaffold_1 (6241534-6241704) | |
| 564-685, gnl|oryCun1|scaffold_200115 (50397-50541) | |
| 564-685, gnl|panTro1|chr12 (48678074-48678230) | |
| 564-685, gnl|rheMac2|chr1 (228177416-228177277) | |
| 564-685, gnl|rn3|chr6 (10414348-10414502) | |
| 564-685, gnl|tetNig1|chrUn_random (138941513-138941660) | |
| 564-685, gnl|xenTro1|scaffold_1474 (141984-141843) | |
| 738-909, gnl|bosTau2|chr10 (49103682-49103853) | |
| 738-909, gnl|canFam2|chr8 (40899098-40899293) | |
| 738-909, gnl|danRer3|chr20 (23605845-23605672) | |
| 738-909, gnl|dasNov1|scaffold_15924 (16441-16650) | |
| 738-909, gnl|echTel1|scaffold_276193 (39612-39811) | |
| 738-909, gnl|fr1|chrUn (221984657-221984469) | |
| 738-909, gnl|galGal2|chr5 (50179305-50179125) | |
| 738-909, gnl|hg17|chr14 (62817415-62817614) | |
| 738-909, gnl|Hg17|chr14 (62817438-62817609) | |
| 738-909, gnl|loxAfr1|scaffold_15016 (42521-42322) | |
| 738-909, gnl|mm7|chr12 (73350109-73350308) | |
| 738-909, gnl|Mm7|chr12 (73350132-73350303) | |
| 738-909, gnl|monDom2|scaffold_8 (76722063-76722263) | |
| 738-909, gnl|oryCun1|scaffold_203674 (43997-44196) | |
| 738-909, gnl|panTro1|chr15 (62377628-62377827) | |
| 738-909, gnl|rheMac2|chr7 (126270703-126270902) | |
| 738-909, gnl|rn3|chr6 (97988530-97988729) | |
| 738-909, gnl|tetNig1|chrUn_random (138948485-138948671) | |
| 738-909, gnl|xenTro1|scaffold_1474 (98020-97826) |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 558-919, gnl|bosTau2|chr15 (32927005-32926644) | |
| 558-919, gnl|Hg17|chr11 (3805945-3805584) | |
| 558-919, gnl|Mm7|chr7 (98286344-98285983) | |
| 564-685, gnl|bosTau2|chr11 (23105029-23104908) | |
| 564-685, gnl|canFam2|chr1 (31090333-31090219) | |
| 564-685, gnl|danRer3|chr12 (23201886-23202032) | |
| 564-685, gnl|dasNov1|scaffold_63091 (6807-6946) | |
| 564-685, gnl|echTel1|scaffold_270982 (3730-3602) | |
| 564-685, gnl|fr1|chrUn (145119960-145120096) | |
| 564-685, gnl|hg17|chr2 (46681837-46681991) | |
| 564-685, gnl|Hg17|chr2 (46681860-46681981) | |
| 564-685, gnl|loxAfr1|scaffold_69093 (1990-1836) | |
| 564-685, gnl|mm7|chr17 (85266048-85266202) | |
| 564-685, gnl|Mm7|chr17 (85266071-85266192) | |
| 564-685, gnl|monDom2|scaffold_1 (6241534-6241704) | |
| 564-685, gnl|oryCun1|scaffold_200115 (50397-50541) | |
| 564-685, gnl|panTro1|chr12 (48678074-48678230) | |
| 564-685, gnl|rheMac2|chr1 (228177416-228177277) | |
| 564-685, gnl|rn3|chr6 (10414348-10414502) | |
| 564-685, gnl|tetNig1|chrUn_random (138941513-138941660) | |
| 564-685, gnl|xenTro1|scaffold_1474 (141984-141843) | |
| 738-909, gnl|bosTau2|chr10 (49103682-49103853) | |
| 738-909, gnl|canFam2|chr8 (40899098-40899293) | |
| 738-909, gnl|danRer3|chr20 (23605845-23605672) | |
| 738-909, gnl|dasNov1|scaffold_15924 (16441-16650) | |
| 738-909, gnl|echTel1|scaffold_276193 (39612-39811) | |
| 738-909, gnl|fr1|chrUn (221984657-221984469) | |
| 738-909, gnl|galGal2|chr5 (50179305-50179125) | |
| 738-909, gnl|hg17|chr14 (62817415-62817614) | |
| 738-909, gnl|Hg17|chr14 (62817438-62817609) | |
| 738-909, gnl|loxAfr1|scaffold_15016 (42521-42322) | |
| 738-909, gnl|mm7|chr12 (73350109-73350308) | |
| 738-909, gnl|Mm7|chr12 (73350132-73350303) | |
| 738-909, gnl|monDom2|scaffold_8 (76722063-76722263) | |
| 738-909, gnl|oryCun1|scaffold_203674 (43997-44196) | |
| 738-909, gnl|panTro1|chr15 (62377628-62377827) | |
| 738-909, gnl|rheMac2|chr7 (126270703-126270902) | |
| 738-909, gnl|rn3|chr6 (97988530-97988729) | |
| 738-909, gnl|tetNig1|chrUn_random (138948485-138948671) | |
| 738-909, gnl|xenTro1|scaffold_1474 (98020-97826) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| mas (0.210305) | |
| sin (0.174948) | |
| hyp (0.142837) | |
| ova (0.129132) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| mas (0.210305) | |
| sin (0.174948) | |
| hyp (0.142837) | |
| ova (0.129132) |