Non-Coding RNA Search

Ss1.1-Ova1-OVRM10150C07.5

Sequence:


               
               CAACCAACCCAGAACGCCCTTGCACTACTTTGACAATCTCTGCATGGCTGCCATGAATTT
TCAGACCATGCACAATGTGACAACAGAGACCCGGTTCCTCCTGAAGCTGGTCAGAGAGGG
CGTGGTGCGGGATCTCAGCGGAGGCATCCATTGTGAATTCTGAACCCAGAAAACCTCACT
CGACAGCGCAGCTCCGACCTGGAGGGCTGCTCCTCGCAGCCTTCTTGACGCATTTCGTCC
TACAATGACTCGGAAGTGCAGCCGGTGTTTTTTAACCTTTAATTTAAAAAACAAGAACAA
ACAAAAAAGTTCAATGCTTCCCATGTTTTTTCCCCTATTTATTTGACGTCAGTGTTTTTG
CACAAAATTTCGTAAGCTAATTTCAAGGATGGGAAAGACTTTCCAAAGAGAAGTGTATGT
GATGATGTGTTTTTGTATTGTAAGCAAGTTATTTAG------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------CATTAAAAAGCAAAAAAAAGTTAT
GTAATTGGTAAAAACTGTTCATTTCTACTGCACACAGAATCCCAGGTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAACCAACCCAGAACGCCCTTGCACTACTTTGACAATCTCTGCATGGCTGCCATGAATTT
TCAGACCATGCACAATGTGACAACAGAGACCCGGTTCCTCCTGAAGCTGGTCAGAGAGGG
CGTGGTGCGGGATCTCAGCGGAGGCATCCATTGTGAATTCTGAACCCAGAAAACCTCACT
CGACAGCGCAGCTCCGACCTGGAGGGCTGCTCCTCGCAGCCTTCTTGACGCATTTCGTCC
TACAATGACTCGGAAGTGCAGCCGGTGTTTTTTAACCTTTAATTTAAAAAACAAGAACAA
ACAAAAAAGTTCAATGCTTCCCATGTTTTTTCCCCTATTTATTTGACGTCAGTGTTTTTG
CACAAAATTTCGTAAGCTAATTTCAAGGATGGGAAAGACTTTCCAAAGAGAAGTGTATGT
GATGATGTGTTTTTGTATTGTAAGCAAGTTATTTAG------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------CATTAAAAAGCAAAAAAAAGTTAT
GTAATTGGTAAAAACTGTTCATTTCTACTGCACACAGAATCCCAGGTA

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-196, gnl|bosTau2|chr11 (34086353-34086548)
               

               
               1-196, gnl|Hg17|chr2 (85979087-85978906)
               

               
               1-196, gnl|Mm7|chr6 (72171448-72171637)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-196, gnl|bosTau2|chr11 (34086353-34086548)
               

               
               1-196, gnl|Hg17|chr2 (85979087-85978906)
               

               
               1-196, gnl|Mm7|chr6 (72171448-72171637)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cag (0.151194)
               

               
               hyp (0.142837)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cag (0.151194)
               

               
               hyp (0.142837)

	1-196, gnl\|bosTau2\|chr11 (34086353-34086548)
	1-196, gnl\|Hg17\|chr2 (85979087-85978906)
	1-196, gnl\|Mm7\|chr6 (72171448-72171637)