Ss1.1-Ova1-OVRM10151A01.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACACTTCCCATCTCTCCGCGCGCGCCCCCGCCTTCCCGGTGAGCCTGTTTGGCGGGAAGT TGGCTTAGTTGGCTTACCTGTGGCTCAGCGGGCTCCCTGGTCCCTCCCTTATTTCTCCCC AGAAGCTTCTCAATCTTCCCCTGGTGATCTCGGCATAGGGCATAGTACCCCTTCGCACGG AGGACGCGATGGCTCCCAGGAAACGCCCAGAAACCCAGAAGACCCCTGAGGTGGTTTTAC GCCCCAAGAGCAAGAGGAACAGAAGCCCCCGTGAGCTGGAGCCCGAGGCCAAGAAGCTCT GTTTGAAGGGCCCCGGTTCCAGCAGAAGATCTGACTCAGGCTGCCTTTGGGCGGGGTTGG CTAGCCTGCGGGTCCCGGCACCATGCAGCAGCATCATCAGGGCTCTCCATCATTATAAGC TGGGCAGAACCTCCTGGCCATCACTACAGCAGGGTCTCCAGCAGTCCTTTTTGCACACTC TGGCTTCTTACCGGATATTCCAAAAGGCTGCCCCTTTTGACAGGAGGGCCACATCCCTGG CATGGCACCCAACTCACCCCAGGATCCTGGCTGTGGGCTCCAAAGGGGGAGATATCTTGC TCTGGAACTTTGGCATAAAGGACAAACCCACCTTCATTAAAGGGATTGGAGCTGGAGGGA GCATCACTGGGCTGAAGTTTAACCCTCTCAATGCCAACCAGTTTTTCACCTCCTCAATGG AGGGAACAACTAGGCTGCAAGACTTTAAAGGCAACACTCTCCGAGTTTTTGCCAGCTCAG GCACCTGCAACATCTGGTTTTGCAGCCTGGATGTGTCGGTCAGAAGCCGAGTGGTGGTCA CAGGAGACAATGTGGGGCATGTGATCCTGCTGAACTTGGACGGCAAGGAGCTTTGGAATC TGAGAATGCACAAAAAGAAAGTGACCCATGTGGCCTTGAACCCATGCTGTGATTGGTTCC TGGCCACAGCCTCCGTAGATCAAACAGTGAAAATCTGGGACCTGCGCCAGGTTAGAGGGA AATCCAGCTTCCTCTACTCGCTGCCGCACAGGCATCCTGTCAACGCAGCTCTTTTCAGTC CCGACGGAGCCCGGCTGCTGACCACTGACCAGAAGAGCGAGATTCGGGTTTACTCTGCCT CCCAGTGGGACTGTCCCCCAAGTCTGATCTCACACCCTCACCGCCACTTCCAGCACCTGA CACCCATCAAGGCAACCTGGCATCCTCGGTACAACCTCATTGTCGTGGGCCGATACCCAG ATCCTAATTTCAAAAGTTGTACCCCTCACGAATTAAGAACAATCGATGTGTTTGATGGAA GCTCAGGAAAGATGATGTATCAGC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACACTTCCCATCTCTCCGCGCGCGCCCCCGCCTTCCCGGTGAGCCTGTTTGGCGGGAAGT TGGCTTAGTTGGCTTACCTGTGGCTCAGCGGGCTCCCTGGTCCCTCCCTTATTTCTCCCC AGAAGCTTCTCAATCTTCCCCTGGTGATCTCGGCATAGGGCATAGTACCCCTTCGCACGG AGGACGCGATGGCTCCCAGGAAACGCCCAGAAACCCAGAAGACCCCTGAGGTGGTTTTAC GCCCCAAGAGCAAGAGGAACAGAAGCCCCCGTGAGCTGGAGCCCGAGGCCAAGAAGCTCT GTTTGAAGGGCCCCGGTTCCAGCAGAAGATCTGACTCAGGCTGCCTTTGGGCGGGGTTGG CTAGCCTGCGGGTCCCGGCACCATGCAGCAGCATCATCAGGGCTCTCCATCATTATAAGC TGGGCAGAACCTCCTGGCCATCACTACAGCAGGGTCTCCAGCAGTCCTTTTTGCACACTC TGGCTTCTTACCGGATATTCCAAAAGGCTGCCCCTTTTGACAGGAGGGCCACATCCCTGG CATGGCACCCAACTCACCCCAGGATCCTGGCTGTGGGCTCCAAAGGGGGAGATATCTTGC TCTGGAACTTTGGCATAAAGGACAAACCCACCTTCATTAAAGGGATTGGAGCTGGAGGGA GCATCACTGGGCTGAAGTTTAACCCTCTCAATGCCAACCAGTTTTTCACCTCCTCAATGG AGGGAACAACTAGGCTGCAAGACTTTAAAGGCAACACTCTCCGAGTTTTTGCCAGCTCAG GCACCTGCAACATCTGGTTTTGCAGCCTGGATGTGTCGGTCAGAAGCCGAGTGGTGGTCA CAGGAGACAATGTGGGGCATGTGATCCTGCTGAACTTGGACGGCAAGGAGCTTTGGAATC TGAGAATGCACAAAAAGAAAGTGACCCATGTGGCCTTGAACCCATGCTGTGATTGGTTCC TGGCCACAGCCTCCGTAGATCAAACAGTGAAAATCTGGGACCTGCGCCAGGTTAGAGGGA AATCCAGCTTCCTCTACTCGCTGCCGCACAGGCATCCTGTCAACGCAGCTCTTTTCAGTC CCGACGGAGCCCGGCTGCTGACCACTGACCAGAAGAGCGAGATTCGGGTTTACTCTGCCT CCCAGTGGGACTGTCCCCCAAGTCTGATCTCACACCCTCACCGCCACTTCCAGCACCTGA CACCCATCAAGGCAACCTGGCATCCTCGGTACAACCTCATTGTCGTGGGCCGATACCCAG ATCCTAATTTCAAAAGTTGTACCCCTCACGAATTAAGAACAATCGATGTGTTTGATGGAA GCTCAGGAAAGATGATGTATCAGC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 490-609, - strand, RNAz p=0.536884 | |
| 549-644, - strand, RNAz p=0.541432 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 490-609, - strand, RNAz p=0.536884 | |
| 549-644, - strand, RNAz p=0.541432 |
| Aligned organism(s): 41 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
| 1-317, gnl|bosTau2|chr15 (49077478-49077172) | |
| 1-317, gnl|Hg17|chr11 (47193025-47193392) | |
| 1-317, gnl|Mm7|chr2 (91087676-91087404) | |
| 451-644, gnl|bosTau2|chr15 (49075532-49075339) | |
| 451-644, gnl|canFam2|chr18 (45410428-45410183) | |
| 451-644, gnl|danRer3|chr18 (25739824-25740063) | |
| 451-644, gnl|dasNov1|scaffold_3846 (854-624) | |
| 451-644, gnl|echTel1|scaffold_311186 (38377-38619) | |
| 451-644, gnl|fr1|chrUn (122380715-122380939) | |
| 451-644, gnl|galGal2|chr5 (20453090-20452875) | |
| 451-644, gnl|hg17|chr11 (47194953-47195198) | |
| 451-644, gnl|Hg17|chr11 (47194983-47195176) | |
| 451-644, gnl|loxAfr1|scaffold_14545 (2654-2899) | |
| 451-644, gnl|mm7|chr2 (91085049-91084804) | |
| 451-644, gnl|Mm7|chr2 (91085017-91084824) | |
| 451-644, gnl|monDom2|scaffold_33 (13109082-13109314) | |
| 451-644, gnl|panTro1|chr9 (47712184-47712429) | |
| 451-644, gnl|rheMac2|chr14 (24904433-24904188) | |
| 451-644, gnl|rn3|chr3 (75485640-75485395) | |
| 451-644, gnl|tetNig1|chrUn_random (129430059-129429821) | |
| 889-1068, gnl|bosTau2|chr15 (49509048-49509227) | |
| 889-1068, gnl|Hg17|chr11 (47212882-47213061) | |
| 889-1068, gnl|Mm7|chr2 (91067948-91067769) | |
| 1210-1344, gnl|bosTau2|chr15 (49058138-49058004) | |
| 1210-1344, gnl|canFam2|chr18 (45389538-45389354) | |
| 1210-1344, gnl|danRer3|chr18 (25746470-25746634) | |
| 1210-1344, gnl|dasNov1|scaffold_3175 (1853-2036) | |
| 1210-1344, gnl|echTel1|scaffold_253200 (2274-2457) | |
| 1210-1344, gnl|galGal2|chr5 (20445861-20445679) | |
| 1210-1344, gnl|hg17|chr11 (47215961-47216145) | |
| 1210-1344, gnl|Hg17|chr11 (47215962-47216096) | |
| 1210-1344, gnl|loxAfr1|scaffold_14545 (13489-13673) | |
| 1210-1344, gnl|mm7|chr2 (91063335-91063151) | |
| 1210-1344, gnl|Mm7|chr2 (91063332-91063198) | |
| 1210-1344, gnl|monDom2|scaffold_33 (13115670-13115854) | |
| 1210-1344, gnl|oryCun1|scaffold_195123 (50247-50063) | |
| 1210-1344, gnl|panTro1|chr9 (47732501-47732685) | |
| 1210-1344, gnl|rheMac2|chr14 (24881745-24881561) | |
| 1210-1344, gnl|rn3|chr3 (75465871-75465687) | |
| 1210-1344, gnl|tetNig1|chrUn_random (129428772-129428608) | |
| 1210-1344, gnl|xenTro1|scaffold_922 (251529-251355) |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-317, gnl|bosTau2|chr15 (49077478-49077172) | |
| 1-317, gnl|Hg17|chr11 (47193025-47193392) | |
| 1-317, gnl|Mm7|chr2 (91087676-91087404) | |
| 451-644, gnl|bosTau2|chr15 (49075532-49075339) | |
| 451-644, gnl|canFam2|chr18 (45410428-45410183) | |
| 451-644, gnl|danRer3|chr18 (25739824-25740063) | |
| 451-644, gnl|dasNov1|scaffold_3846 (854-624) | |
| 451-644, gnl|echTel1|scaffold_311186 (38377-38619) | |
| 451-644, gnl|fr1|chrUn (122380715-122380939) | |
| 451-644, gnl|galGal2|chr5 (20453090-20452875) | |
| 451-644, gnl|hg17|chr11 (47194953-47195198) | |
| 451-644, gnl|Hg17|chr11 (47194983-47195176) | |
| 451-644, gnl|loxAfr1|scaffold_14545 (2654-2899) | |
| 451-644, gnl|mm7|chr2 (91085049-91084804) | |
| 451-644, gnl|Mm7|chr2 (91085017-91084824) | |
| 451-644, gnl|monDom2|scaffold_33 (13109082-13109314) | |
| 451-644, gnl|panTro1|chr9 (47712184-47712429) | |
| 451-644, gnl|rheMac2|chr14 (24904433-24904188) | |
| 451-644, gnl|rn3|chr3 (75485640-75485395) | |
| 451-644, gnl|tetNig1|chrUn_random (129430059-129429821) | |
| 889-1068, gnl|bosTau2|chr15 (49509048-49509227) | |
| 889-1068, gnl|Hg17|chr11 (47212882-47213061) | |
| 889-1068, gnl|Mm7|chr2 (91067948-91067769) | |
| 1210-1344, gnl|bosTau2|chr15 (49058138-49058004) | |
| 1210-1344, gnl|canFam2|chr18 (45389538-45389354) | |
| 1210-1344, gnl|danRer3|chr18 (25746470-25746634) | |
| 1210-1344, gnl|dasNov1|scaffold_3175 (1853-2036) | |
| 1210-1344, gnl|echTel1|scaffold_253200 (2274-2457) | |
| 1210-1344, gnl|galGal2|chr5 (20445861-20445679) | |
| 1210-1344, gnl|hg17|chr11 (47215961-47216145) | |
| 1210-1344, gnl|Hg17|chr11 (47215962-47216096) | |
| 1210-1344, gnl|loxAfr1|scaffold_14545 (13489-13673) | |
| 1210-1344, gnl|mm7|chr2 (91063335-91063151) | |
| 1210-1344, gnl|Mm7|chr2 (91063332-91063198) | |
| 1210-1344, gnl|monDom2|scaffold_33 (13115670-13115854) | |
| 1210-1344, gnl|oryCun1|scaffold_195123 (50247-50063) | |
| 1210-1344, gnl|panTro1|chr9 (47732501-47732685) | |
| 1210-1344, gnl|rheMac2|chr14 (24881745-24881561) | |
| 1210-1344, gnl|rn3|chr3 (75465871-75465687) | |
| 1210-1344, gnl|tetNig1|chrUn_random (129428772-129428608) | |
| 1210-1344, gnl|xenTro1|scaffold_922 (251529-251355) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eep (0.122564) | |
| cty (0.10408) | |
| ldo (0.0970026) |