Ss1.1-Ova1-OVRM10152E07.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GACACAGGGTCTCTGAGGATCGAAGGAGAGGTGTCCCAGGCTTGCAAAAGCGTGTGGGTG TGCATGTGTGTGTGCGCGCGTGCGATGTTACCTCATCATAACATTATCTTTCTGTTTTTA ACCATAAGTAAGGTATGGGCTTATTTTGCCAAAGAAAGCACAGCAGTTGCACCCTGTTTT GCAAAAACCTTCAGTGTTTGGGAATGATTCTGATGATGATGATGAGACCTCCGTGAGTGA AAGCCTTCAGAGGGAAGCTGCTAAGAAGCAAGCAATGAAACAGACCAAACTGGAAATCCA GAAGGCTCTTGCAGAAGATTCTACTGTATATGAATATGACAGTATTTATGATGAAATGCA GAAAAAAAAGGAAGAAAGTAATCCCAGATTGCTTTTAGGAAAAGACCGAAAGCCCAAGTA TATTCACAACTTACTAAAAGCAGTTGAGATCAGAAAAAAGGAACAGGAAAAAAGAATGGA AAAGAAAATACAGAGAGAACGAGAAATGGAAAAGGGAGAATTTGATGATAAAGAGGCATT TGTAACATCTGCTTATAAGAAAAAACTGCAAGAGAGAGCTGAAGAGGAGGAAAGAGAAAG GAGGGCTGCTGCACTCGAAGCCCGTTTGGATGTAACGAAGCAGAGAGATCTCAGTGGATT TTATAGGCACTTATTAAATCAAGCAGTTGGTGAAGAGGAAGTACCTACATGCAGCTTTCG TGAAGCCAGGTCTGGGATAAAAGAAGAGAAATCAAAGGGATATCCTGATGAAGTAAGTTC AGAGAACAGAATACCTCATGAGAAATGCAGTCTCCAAACTGTTGTGAAAGTTGAGGAAAA CCCTGATGCAGACAGTGACTTGGATGCTAAGAGCAGTGAGGATGATGCAGTGGAAGAAAA TAAAGGGAACTGCAGAAGGGAAAAGGGCACAGAGACCTTAAAAAATAATTCCAAGCATCA CAGGAATCATACCCACTCACGATCATCTAGTGAAGAAAGAGAGCATGGTACCAAACACTA CGCAAAAAGTACCAAGTCAAGAGGACATGAGAAAAGGGAAGATCCGCACCAAGAGAGACA GTCCAGGGAGCAGGACAGTTATTTCACTGACCGTGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GACACAGGGTCTCTGAGGATCGAAGGAGAGGTGTCCCAGGCTTGCAAAAGCGTGTGGGTG TGCATGTGTGTGTGCGCGCGTGCGATGTTACCTCATCATAACATTATCTTTCTGTTTTTA ACCATAAGTAAGGTATGGGCTTATTTTGCCAAAGAAAGCACAGCAGTTGCACCCTGTTTT GCAAAAACCTTCAGTGTTTGGGAATGATTCTGATGATGATGATGAGACCTCCGTGAGTGA AAGCCTTCAGAGGGAAGCTGCTAAGAAGCAAGCAATGAAACAGACCAAACTGGAAATCCA GAAGGCTCTTGCAGAAGATTCTACTGTATATGAATATGACAGTATTTATGATGAAATGCA GAAAAAAAAGGAAGAAAGTAATCCCAGATTGCTTTTAGGAAAAGACCGAAAGCCCAAGTA TATTCACAACTTACTAAAAGCAGTTGAGATCAGAAAAAAGGAACAGGAAAAAAGAATGGA AAAGAAAATACAGAGAGAACGAGAAATGGAAAAGGGAGAATTTGATGATAAAGAGGCATT TGTAACATCTGCTTATAAGAAAAAACTGCAAGAGAGAGCTGAAGAGGAGGAAAGAGAAAG GAGGGCTGCTGCACTCGAAGCCCGTTTGGATGTAACGAAGCAGAGAGATCTCAGTGGATT TTATAGGCACTTATTAAATCAAGCAGTTGGTGAAGAGGAAGTACCTACATGCAGCTTTCG TGAAGCCAGGTCTGGGATAAAAGAAGAGAAATCAAAGGGATATCCTGATGAAGTAAGTTC AGAGAACAGAATACCTCATGAGAAATGCAGTCTCCAAACTGTTGTGAAAGTTGAGGAAAA CCCTGATGCAGACAGTGACTTGGATGCTAAGAGCAGTGAGGATGATGCAGTGGAAGAAAA TAAAGGGAACTGCAGAAGGGAAAAGGGCACAGAGACCTTAAAAAATAATTCCAAGCATCA CAGGAATCATACCCACTCACGATCATCTAGTGAAGAAAGAGAGCATGGTACCAAACACTA CGCAAAAAGTACCAAGTCAAGAGGACATGAGAAAAGGGAAGATCCGCACCAAGAGAGACA GTCCAGGGAGCAGGACAGTTATTTCACTGACCGTGA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 34 entry(ies) | More info |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
| 411-620, gnl|bosTau2|chr19 (15714274-15714483) | |
| 411-620, gnl|canFam2|chr9 (47530237-47530449) | |
| 411-620, gnl|danRer3|chrNA (202129504-202129292) | |
| 411-620, gnl|dasNov1|scaffold_2852 (4506-4297) | |
| 411-620, gnl|echTel1|scaffold_324464 (53996-54208) | |
| 411-620, gnl|fr1|chrUn (169672857-169672645) | |
| 411-620, gnl|galGal2|chr19 (5772506-5772718) | |
| 411-620, gnl|hg17|chr17 (25530233-25530445) | |
| 411-620, gnl|Hg17|chr17 (25530232-25530441) | |
| 411-620, gnl|loxAfr1|scaffold_169982 (4455-4243) | |
| 411-620, gnl|mm7|chr11 (77131058-77130846) | |
| 411-620, gnl|Mm7|chr11 (77131057-77130848) | |
| 411-620, gnl|monDom2|scaffold_86 (572989-573201) | |
| 411-620, gnl|oryCun1|scaffold_144946 (8440-8228) | |
| 411-620, gnl|panTro1|chr19 (28893649-28893862) | |
| 411-620, gnl|rheMac2|chr16 (25416447-25416659) | |
| 411-620, gnl|rn3|chr10 (67121486-67121698) | |
| 411-620, gnl|tetNig1|chr7 (7267611-7267823) | |
| 411-620, gnl|xenTro1|scaffold_67 (2438520-2438308) | |
| 728-1116, gnl|bosTau2|chr19 (15717205-15717594) | |
| 728-1116, gnl|canFam2|chr9 (47533369-47533833) | |
| 728-1116, gnl|dasNov1|scaffold_19053 (2625-2163) | |
| 728-1116, gnl|echTel1|scaffold_285418 (12507-12034) | |
| 728-1116, gnl|galGal2|chr19 (5775157-5775654) | |
| 728-1116, gnl|hg17|chr1 (78025460-78025929) | |
| 728-1116, gnl|Hg17|chr17 (25535757-25536148) | |
| 728-1116, gnl|loxAfr1|scaffold_46511 (9743-9309) | |
| 728-1116, gnl|mm7|chr11 (77128328-77127876) | |
| 728-1116, gnl|Mm7|chr11 (77128331-77127958) | |
| 728-1116, gnl|monDom2|scaffold_6 (28696877-28696428) | |
| 728-1116, gnl|oryCun1|scaffold_144946 (1790-1323) | |
| 728-1116, gnl|panTro1|chr1 (76603742-76604211) | |
| 728-1116, gnl|rheMac2|chr1 (80687450-80687916) | |
| 728-1116, gnl|rn3|chr10 (67124443-67124907) |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 411-620, gnl|bosTau2|chr19 (15714274-15714483) | |
| 411-620, gnl|canFam2|chr9 (47530237-47530449) | |
| 411-620, gnl|danRer3|chrNA (202129504-202129292) | |
| 411-620, gnl|dasNov1|scaffold_2852 (4506-4297) | |
| 411-620, gnl|echTel1|scaffold_324464 (53996-54208) | |
| 411-620, gnl|fr1|chrUn (169672857-169672645) | |
| 411-620, gnl|galGal2|chr19 (5772506-5772718) | |
| 411-620, gnl|hg17|chr17 (25530233-25530445) | |
| 411-620, gnl|Hg17|chr17 (25530232-25530441) | |
| 411-620, gnl|loxAfr1|scaffold_169982 (4455-4243) | |
| 411-620, gnl|mm7|chr11 (77131058-77130846) | |
| 411-620, gnl|Mm7|chr11 (77131057-77130848) | |
| 411-620, gnl|monDom2|scaffold_86 (572989-573201) | |
| 411-620, gnl|oryCun1|scaffold_144946 (8440-8228) | |
| 411-620, gnl|panTro1|chr19 (28893649-28893862) | |
| 411-620, gnl|rheMac2|chr16 (25416447-25416659) | |
| 411-620, gnl|rn3|chr10 (67121486-67121698) | |
| 411-620, gnl|tetNig1|chr7 (7267611-7267823) | |
| 411-620, gnl|xenTro1|scaffold_67 (2438520-2438308) | |
| 728-1116, gnl|bosTau2|chr19 (15717205-15717594) | |
| 728-1116, gnl|canFam2|chr9 (47533369-47533833) | |
| 728-1116, gnl|dasNov1|scaffold_19053 (2625-2163) | |
| 728-1116, gnl|echTel1|scaffold_285418 (12507-12034) | |
| 728-1116, gnl|galGal2|chr19 (5775157-5775654) | |
| 728-1116, gnl|hg17|chr1 (78025460-78025929) | |
| 728-1116, gnl|Hg17|chr17 (25535757-25536148) | |
| 728-1116, gnl|loxAfr1|scaffold_46511 (9743-9309) | |
| 728-1116, gnl|mm7|chr11 (77128328-77127876) | |
| 728-1116, gnl|Mm7|chr11 (77128331-77127958) | |
| 728-1116, gnl|monDom2|scaffold_6 (28696877-28696428) | |
| 728-1116, gnl|oryCun1|scaffold_144946 (1790-1323) | |
| 728-1116, gnl|panTro1|chr1 (76603742-76604211) | |
| 728-1116, gnl|rheMac2|chr1 (80687450-80687916) | |
| 728-1116, gnl|rn3|chr10 (67124443-67124907) |
| Expressed library(ies): 6 entry(ies) | More info |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
| csk (0.140746) | |
| ste (0.135208) | |
| ute (0.132784) | |
| ova (0.129132) | |
| jca (0.11396) | |
| spc (0.113366) |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| csk (0.140746) | |
| ste (0.135208) | |
| ute (0.132784) | |
| ova (0.129132) | |
| jca (0.11396) | |
| spc (0.113366) |