Non-Coding RNA Search

Ss1.1-Ova1-OVRM10153A05.5

Sequence:


               
               ACTGCTCCGGCAGCTGGAGAGAAGGCGGCTCGGCAGTGGCGCTGCTGAGACCGGGTCGAG
ACGCCAAGCAGCCGCGGCGCGCACGGCGCTTTCCAGCTCCCTCCCCCGAGTGCACAGCCC
GCCTCCTTCCGCGGTGCCTGCAGCCGCGGGCTCACTCTCCCCTCCCGAGAGCACTCAGAG
AGCCGCTCCGCGGGTGGCGGGCGCAGAGTCCGCGGTGTGGGGATCTTGAGGCCGCGGCGA
TCTGCCCGCGGTAACCAGCCCGCGAACCAGAGCCCCATGCGCACTCCTTTCGCCCCGGCA
GTCGCTGTTGCTCCCTGGGGTTGAGATCGCTGCTTCCTCGCCTCCCCGCCCTGTGACCGA
GGCAAGAACCCAGCTGGTTGTGTGCTGTGGCCGGTCGCCACTGCTGAGTGGAAGCAAAAT
GTCCGTCAGCGTGCACGAGAACCGCAAGTCCAGGGCCAGCAGCGGCTCCATTAACATCTA
CCTGTTCCACAAGTCCTCCTACGCCGACAGCGTCCTCACCCACCTGAACCTGTTACGCCA
GCAGCGCCTCTTCACCGACGTCCTTCTCCATGCCGGAAACAGGACCTTCCCTTGTCACCG
GGCCGTGCTGGCAGCGTGTAGCCGCTACTTTGAAGCCATGTTCAGTGGTGGCCTGAAAGA
GAGCCAGGACAGCGAGGTCAACTTCGACAATTCCATCCACCCAGAGGTCTTGGAGCTGCT
CCTCGACTATGCCTACTCCTCCCGGGTCATCATCAATGAAGAAAACGCAGAATCCCTCCT
GGAAGCCGGGGACATGCTGGAGTTTCAAGACATCCGGGATGCGTGCGCTGAGTTCCTGGA
GAAGAACCTGCACCCCACCAACTGCCTGGGCATGCTGCTGCTGTCCGATGCGCACCAGTG
CACCAAGCTGTACGAGCTCTCCTGGAGGATGTGTCTCAGCAACTTCCAGACCATCAGGAA
GAATGAAGACTTCCTCCAGCTGCCCCAGGACATGGTAGTGCAGCTCTTGTCCAGTGAAGA
GCTGGAGACTGAAGACGAAAGGCTCGTGTACGAGTCTGCGATTAACTGGATCAGCTACGA
TCTGAAGAAGCGCTACTGCTACCTCCCGGAGCTGTTGCAGACTGTGAGGCTGGCCCTCTT
GCCAGCCATCTATCTCATGGAGAACGTGGCCATGGAGGAACTCATCACCAAACAGAGGAA
GAGCAAGGAGAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACTGCTCCGGCAGCTGGAGAGAAGGCGGCTCGGCAGTGGCGCTGCTGAGACCGGGTCGAG
ACGCCAAGCAGCCGCGGCGCGCACGGCGCTTTCCAGCTCCCTCCCCCGAGTGCACAGCCC
GCCTCCTTCCGCGGTGCCTGCAGCCGCGGGCTCACTCTCCCCTCCCGAGAGCACTCAGAG
AGCCGCTCCGCGGGTGGCGGGCGCAGAGTCCGCGGTGTGGGGATCTTGAGGCCGCGGCGA
TCTGCCCGCGGTAACCAGCCCGCGAACCAGAGCCCCATGCGCACTCCTTTCGCCCCGGCA
GTCGCTGTTGCTCCCTGGGGTTGAGATCGCTGCTTCCTCGCCTCCCCGCCCTGTGACCGA
GGCAAGAACCCAGCTGGTTGTGTGCTGTGGCCGGTCGCCACTGCTGAGTGGAAGCAAAAT
GTCCGTCAGCGTGCACGAGAACCGCAAGTCCAGGGCCAGCAGCGGCTCCATTAACATCTA
CCTGTTCCACAAGTCCTCCTACGCCGACAGCGTCCTCACCCACCTGAACCTGTTACGCCA
GCAGCGCCTCTTCACCGACGTCCTTCTCCATGCCGGAAACAGGACCTTCCCTTGTCACCG
GGCCGTGCTGGCAGCGTGTAGCCGCTACTTTGAAGCCATGTTCAGTGGTGGCCTGAAAGA
GAGCCAGGACAGCGAGGTCAACTTCGACAATTCCATCCACCCAGAGGTCTTGGAGCTGCT
CCTCGACTATGCCTACTCCTCCCGGGTCATCATCAATGAAGAAAACGCAGAATCCCTCCT
GGAAGCCGGGGACATGCTGGAGTTTCAAGACATCCGGGATGCGTGCGCTGAGTTCCTGGA
GAAGAACCTGCACCCCACCAACTGCCTGGGCATGCTGCTGCTGTCCGATGCGCACCAGTG
CACCAAGCTGTACGAGCTCTCCTGGAGGATGTGTCTCAGCAACTTCCAGACCATCAGGAA
GAATGAAGACTTCCTCCAGCTGCCCCAGGACATGGTAGTGCAGCTCTTGTCCAGTGAAGA
GCTGGAGACTGAAGACGAAAGGCTCGTGTACGAGTCTGCGATTAACTGGATCAGCTACGA
TCTGAAGAAGCGCTACTGCTACCTCCCGGAGCTGTTGCAGACTGTGAGGCTGGCCCTCTT
GCCAGCCATCTATCTCATGGAGAACGTGGCCATGGAGGAACTCATCACCAAACAGAGGAA
GAGCAAGGAGAT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|50787132|ref|XP_423507.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|50787132|ref|XP_423507.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               885-1164, - strand, RNAz p=0.961589

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               885-1164, - strand, RNAz p=0.961589

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               406-1212, gnl|bosTau2|chr25 (13292704-13291900)
               

               
               406-1212, gnl|Hg17|chr5 (73968079-73967273)
               

               
               406-1212, gnl|Mm7|chr13 (94315375-94316181)
               


               
               419-1171, gnl|bosTau2|chr21 (9882588-9881836)
               

               
               419-1171, gnl|Hg17|chr15 (84114045-84113293)
               

               
               419-1171, gnl|Mm7|chr7 (71727311-71728063)
               


               
               586-917, gnl|bosTau2|chr16 (34594162-34594489)
               

               
               586-917, gnl|Hg17|chr1 (6597006-6596679)
               

               
               586-917, gnl|Mm7|chr4 (150998622-150998949)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               406-1212, gnl|bosTau2|chr25 (13292704-13291900)
               

               
               406-1212, gnl|Hg17|chr5 (73968079-73967273)
               

               
               406-1212, gnl|Mm7|chr13 (94315375-94316181)
               


               
               419-1171, gnl|bosTau2|chr21 (9882588-9881836)
               

               
               419-1171, gnl|Hg17|chr15 (84114045-84113293)
               

               
               419-1171, gnl|Mm7|chr7 (71727311-71728063)
               


               
               586-917, gnl|bosTau2|chr16 (34594162-34594489)
               

               
               586-917, gnl|Hg17|chr1 (6597006-6596679)
               

               
               586-917, gnl|Mm7|chr4 (150998622-150998949)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               ebs (0.118301)
               

               
               ecc (0.115035)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.118301)
               

               
               ecc (0.115035)

	406-1212, gnl\|bosTau2\|chr25 (13292704-13291900)
	406-1212, gnl\|Hg17\|chr5 (73968079-73967273)
	406-1212, gnl\|Mm7\|chr13 (94315375-94316181)

	419-1171, gnl\|bosTau2\|chr21 (9882588-9881836)
	419-1171, gnl\|Hg17\|chr15 (84114045-84113293)
	419-1171, gnl\|Mm7\|chr7 (71727311-71728063)

	586-917, gnl\|bosTau2\|chr16 (34594162-34594489)
	586-917, gnl\|Hg17\|chr1 (6597006-6596679)
	586-917, gnl\|Mm7\|chr4 (150998622-150998949)