Non-Coding RNA Search

Ss1.1-Ova1-OVRM10154A09.5

Sequence:


               
               ATTTTCCACTGGCTGGCGGGGCGCGCGGGCTGCGGGCCGGCCCGTGGATTCTGCCTCTTT
TCTGGAGGTAAACTTTTCTGAAGACACCACCAGCCCCGGGTCCTGCGGGTCTCTCCCACG
AAGCAAAGCAGGAGGGAGCCCCGAGAGCACCAGCCACCCTGCCAGGCTGCCTGCCCTGGA
GGCCCACACCCCAGGGGCTCCGTCGATGTCCTGGCGCCACTTGGAGAGGCCAGCCCCACG
CAGAGGCCAAGGCCGCCAGTGCCCACAGCTGGTTCCAGGAAGCACGAGCCCAGCCGCCGC
AGAGGATAAAATGCCAAGCCCGTGCTCTGCCTTCAGGTGCCCAGCAGCCCACATGCTTTC
CTAGTCCCACCAGGAACCGTCGGTCTCGGTCCCTTCCTGCCTCCACGCTTGCTGTCGGTC
CTCCAGCTGACCTGTCACCATGGCAGCCCTGATTGCAGAAAACTTCCGCTTCCTATCGCT
CTTCTTCAAGAGCAAAGATGTGATGATCTTCAATGGGCTGGTGGCCCTGGGCACGGTGGG
CAGCCAGGAGCTATTCACTGTGGTGGCTTTCCACTGCCCTTGCTCACCAGCCCGGAACTA
CCTGTATGGGCTGACAGCCATCGGGGTGCCCGCCCTGGCGCTCTTCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTTTCCACTGGCTGGCGGGGCGCGCGGGCTGCGGGCCGGCCCGTGGATTCTGCCTCTTT
TCTGGAGGTAAACTTTTCTGAAGACACCACCAGCCCCGGGTCCTGCGGGTCTCTCCCACG
AAGCAAAGCAGGAGGGAGCCCCGAGAGCACCAGCCACCCTGCCAGGCTGCCTGCCCTGGA
GGCCCACACCCCAGGGGCTCCGTCGATGTCCTGGCGCCACTTGGAGAGGCCAGCCCCACG
CAGAGGCCAAGGCCGCCAGTGCCCACAGCTGGTTCCAGGAAGCACGAGCCCAGCCGCCGC
AGAGGATAAAATGCCAAGCCCGTGCTCTGCCTTCAGGTGCCCAGCAGCCCACATGCTTTC
CTAGTCCCACCAGGAACCGTCGGTCTCGGTCCCTTCCTGCCTCCACGCTTGCTGTCGGTC
CTCCAGCTGACCTGTCACCATGGCAGCCCTGATTGCAGAAAACTTCCGCTTCCTATCGCT
CTTCTTCAAGAGCAAAGATGTGATGATCTTCAATGGGCTGGTGGCCCTGGGCACGGTGGG
CAGCCAGGAGCTATTCACTGTGGTGGCTTTCCACTGCCCTTGCTCACCAGCCCGGAACTA
CCTGTATGGGCTGACAGCCATCGGGGTGCCCGCCCTGGCGCTCTTCCT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               392-648, - strand, RNAz p=0.96981

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               392-648, - strand, RNAz p=0.96981

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               276-648, gnl|bosTau2|chr26 (15977078-15977449)
               

               
               276-648, gnl|Hg17|chr10 (105199849-105199480)
               

               
               276-648, gnl|Mm7|chr19 (47036565-47036192)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               276-648, gnl|bosTau2|chr26 (15977078-15977449)
               

               
               276-648, gnl|Hg17|chr10 (105199849-105199480)
               

               
               276-648, gnl|Mm7|chr19 (47036565-47036192)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eep (0.122564)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)

	276-648, gnl\|bosTau2\|chr26 (15977078-15977449)
	276-648, gnl\|Hg17\|chr10 (105199849-105199480)
	276-648, gnl\|Mm7\|chr19 (47036565-47036192)