Ss1.1-Ova1-OVRM10154B09.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATTTTCCGCCCGGCCGGCGGCGCGGTGGGGCCAGTGCCAGCAGAGGCGCGCGGTCCTCCC TCCGCCCGCCCGCGCCGGGGGCTGGCCCTGCCTCGCCGGCGCCTTTTTCCCCCGCACCGC GGCGCCGCTTCGCCACTCGGGCACCACAGGTAGGGCAGGAGGCTGGAGTGCCTGCTGCCC GCTGCCCGTAAAATGGTCACCTCGGCTGGACAGTTCGCCCTCTTCGCGCTGGGTATCTTG TTGGCCGTGTGCCAGGCCCTGGAGAACAGCACGTCCGCCCTGAGTGCAGACCCGCCCATA GCTGCAGCTGTGGTGTCCCATTTTAATGACTGCCCAGATTCCCACAGTCAGTTCTGCTTC CATGGAACCTGCAGGTTTTTGGTGCAGGAGGACAAGCCAGCATGTGTCTGCCACTCTGGG TACGTCGGCGCGCGCTGTGAACACGCAGACCTCCTGGCGGTGGTGGCCGCCAGCCAGAAG AAGCAGGCCATTACCGCCTTGGTGGTGGTCTCCATAGTGGCCCTGGCTGTCCTCATCATC ACATGTGTGCTGATACACTGCTGCCAGGTCCGAAAACACTGTGAGTGGTGCCGGGCCCTC ATCTGCCGGCACGAGAAGCCCAGTGCCCTCCTGAAGGGAAGGACCGCTTGCTGCCACTCA GAAACAGTGGTCTGAGGAGCCCAGAGGAGGAGTCCTGCCAGGTGGCCCGCGGCAGCCTGA GGAAGAAAGGACTTCTTGAGGTCGGGACAGCAAGGGCGGCCTGGGACATGCCCACAGACC TTCCCGACTCTGCCTGCGATCGCCTATGCGGCCTTTGCATCTCTTGTGGGCCTTTCTTCC AAACTCTGTCAAGAACTCTGTCTGCTTGGGTTTATGCAGTGTGACCTGGAGAAGAAATCA GTGCACCACAGCTTAACGACTGGTCCAAAAGGACCAGCACGGGGCGGACCTCCCATTTAC CTAGTGAGGTGTGTGCGTCCCATCTGCTTCCAGGGCTGTGTGGGTGTGTTCTGCCATCAC GGATGCCAGGCTGTGTTTCTCTTTAATGGGCCTATCTTCCCACAAGGCTCCATCCTACCC GACACCAGAGAGTCCCACAGTTGGTACAGTTTTTTTCTTATCCGCTCATGGGGGAAGAAG GTAGAAAAGGCATAACTGCTTTTTGCTACGTGAAGACACCAGAGGAGGGCGCGTCTGCTC TCTGTCCACGAAACCCTCAACCAGCCTGAAGTCTTCCATCGTCGCATGAGGTTGAAGACC TTCCCAAGCCATCACCACCCTCAGAGATGAATTCTTATTTAGTAGATGGAGAATGGTTTT ATTTTTAATCTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATTTTCCGCCCGGCCGGCGGCGCGGTGGGGCCAGTGCCAGCAGAGGCGCGCGGTCCTCCC TCCGCCCGCCCGCGCCGGGGGCTGGCCCTGCCTCGCCGGCGCCTTTTTCCCCCGCACCGC GGCGCCGCTTCGCCACTCGGGCACCACAGGTAGGGCAGGAGGCTGGAGTGCCTGCTGCCC GCTGCCCGTAAAATGGTCACCTCGGCTGGACAGTTCGCCCTCTTCGCGCTGGGTATCTTG TTGGCCGTGTGCCAGGCCCTGGAGAACAGCACGTCCGCCCTGAGTGCAGACCCGCCCATA GCTGCAGCTGTGGTGTCCCATTTTAATGACTGCCCAGATTCCCACAGTCAGTTCTGCTTC CATGGAACCTGCAGGTTTTTGGTGCAGGAGGACAAGCCAGCATGTGTCTGCCACTCTGGG TACGTCGGCGCGCGCTGTGAACACGCAGACCTCCTGGCGGTGGTGGCCGCCAGCCAGAAG AAGCAGGCCATTACCGCCTTGGTGGTGGTCTCCATAGTGGCCCTGGCTGTCCTCATCATC ACATGTGTGCTGATACACTGCTGCCAGGTCCGAAAACACTGTGAGTGGTGCCGGGCCCTC ATCTGCCGGCACGAGAAGCCCAGTGCCCTCCTGAAGGGAAGGACCGCTTGCTGCCACTCA GAAACAGTGGTCTGAGGAGCCCAGAGGAGGAGTCCTGCCAGGTGGCCCGCGGCAGCCTGA GGAAGAAAGGACTTCTTGAGGTCGGGACAGCAAGGGCGGCCTGGGACATGCCCACAGACC TTCCCGACTCTGCCTGCGATCGCCTATGCGGCCTTTGCATCTCTTGTGGGCCTTTCTTCC AAACTCTGTCAAGAACTCTGTCTGCTTGGGTTTATGCAGTGTGACCTGGAGAAGAAATCA GTGCACCACAGCTTAACGACTGGTCCAAAAGGACCAGCACGGGGCGGACCTCCCATTTAC CTAGTGAGGTGTGTGCGTCCCATCTGCTTCCAGGGCTGTGTGGGTGTGTTCTGCCATCAC GGATGCCAGGCTGTGTTTCTCTTTAATGGGCCTATCTTCCCACAAGGCTCCATCCTACCC GACACCAGAGAGTCCCACAGTTGGTACAGTTTTTTTCTTATCCGCTCATGGGGGAAGAAG GTAGAAAAGGCATAACTGCTTTTTGCTACGTGAAGACACCAGAGGAGGGCGCGTCTGCTC TCTGTCCACGAAACCCTCAACCAGCCTGAAGTCTTCCATCGTCGCATGAGGTTGAAGACC TTCCCAAGCCATCACCACCCTCAGAGATGAATTCTTATTTAGTAGATGGAGAATGGTTTT ATTTTTAATCTC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 408-557, + strand, RNAz p=0.914809 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 408-557, + strand, RNAz p=0.914809 |
| Aligned organism(s): 51 entry(ies) | More info |
| Aligned organism(s): 51 entry(ies) | Help | Less info |
| 286-407, gnl|bosTau2|chr14 (18351680-18351559) | |
| 286-407, gnl|canFam2|chr10 (72082737-72082915) | |
| 286-407, gnl|danRer3|chr24 (16361538-16361724) | |
| 286-407, gnl|dasNov1|scaffold_14082 (7992-7811) | |
| 286-407, gnl|echTel1|scaffold_236925 (2768-2951) | |
| 286-407, gnl|fr1|chrUn (216541894-216542063) | |
| 286-407, gnl|hg17|chr2 (70604383-70604566) | |
| 286-407, gnl|Hg17|chr2 (70604524-70604403) | |
| 286-407, gnl|loxAfr1|scaffold_4093 (44585-44401) | |
| 286-407, gnl|mm7|chr6 (86338385-86338214) | |
| 286-407, gnl|Mm7|chr6 (86338241-86338362) | |
| 286-407, gnl|monDom2|scaffold_1 (94181458-94181611) | |
| 286-407, gnl|oryCun1|scaffold_203277 (160066-159885) | |
| 286-407, gnl|panTro1|chr12 (72931137-72931320) | |
| 286-407, gnl|rheMac2|chr13 (70782214-70782397) | |
| 286-407, gnl|rn3|chr4 (120669451-120669275) | |
| 286-407, gnl|tetNig1|chr11 (5188575-5188716) | |
| 286-407, gnl|xenTro1|scaffold_110 (1582478-1582302) | |
| 408-557, gnl|bosTau2|chr14 (18338587-18338438) | |
| 408-557, gnl|canFam2|chr10 (72073361-72073546) | |
| 408-557, gnl|danRer3|chr24 (16358279-16358453) | |
| 408-557, gnl|dasNov1|scaffold_14082 (22139-21910) | |
| 408-557, gnl|fr1|chrUn (216541161-216541353) | |
| 408-557, gnl|galGal2|chrUn (89537421-89537602) | |
| 408-557, gnl|hg17|chr2 (70595107-70595336) | |
| 408-557, gnl|Hg17|chr2 (70595275-70595126) | |
| 408-557, gnl|loxAfr1|scaffold_4093 (53237-53005) | |
| 408-557, gnl|mm7|chr6 (86345186-86344966) | |
| 408-557, gnl|Mm7|chr6 (86345016-86345165) | |
| 408-557, gnl|monDom2|scaffold_1 (94170918-94171134) | |
| 408-557, gnl|oryCun1|scaffold_174465 (7777-8002) | |
| 408-557, gnl|panTro1|chr12 (72921875-72922104) | |
| 408-557, gnl|rheMac2|chr13 (70773061-70773290) | |
| 408-557, gnl|rn3|chr4 (120676770-120676551) | |
| 408-557, gnl|tetNig1|chr11 (5188330-5188534) | |
| 408-557, gnl|xenTro1|scaffold_110 (1583469-1583292) | |
| 665-1029, gnl|bosTau2|chr14 (18335054-18334688) | |
| 665-1029, gnl|Hg17|chr2 (70589656-70589301) | |
| 665-1029, gnl|Mm7|chr6 (86347031-86347375) | |
| 1055-1332, gnl|bosTau2|chr14 (18334682-18334399) | |
| 1055-1332, gnl|dasNov1|scaffold_14082 (27582-27050) | |
| 1055-1332, gnl|echTel1|scaffold_232844 (4899-4373) | |
| 1055-1332, gnl|hg17|chr2 (70588789-70589347) | |
| 1055-1332, gnl|Hg17|chr2 (70589274-70589001) | |
| 1055-1332, gnl|loxAfr1|scaffold_4093 (58188-57642) | |
| 1055-1332, gnl|mm7|chr6 (86347761-86347339) | |
| 1055-1332, gnl|monDom2|scaffold_1 (94162784-94163465) | |
| 1055-1332, gnl|oryCun1|scaffold_174465 (3054-3579) | |
| 1055-1332, gnl|panTro1|chr12 (72914206-72914764) | |
| 1055-1332, gnl|rheMac2|chr13 (70766756-70767314) | |
| 1055-1332, gnl|rn3|chr4 (120679346-120678943) |
| Aligned organism(s): 51 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 286-407, gnl|bosTau2|chr14 (18351680-18351559) | |
| 286-407, gnl|canFam2|chr10 (72082737-72082915) | |
| 286-407, gnl|danRer3|chr24 (16361538-16361724) | |
| 286-407, gnl|dasNov1|scaffold_14082 (7992-7811) | |
| 286-407, gnl|echTel1|scaffold_236925 (2768-2951) | |
| 286-407, gnl|fr1|chrUn (216541894-216542063) | |
| 286-407, gnl|hg17|chr2 (70604383-70604566) | |
| 286-407, gnl|Hg17|chr2 (70604524-70604403) | |
| 286-407, gnl|loxAfr1|scaffold_4093 (44585-44401) | |
| 286-407, gnl|mm7|chr6 (86338385-86338214) | |
| 286-407, gnl|Mm7|chr6 (86338241-86338362) | |
| 286-407, gnl|monDom2|scaffold_1 (94181458-94181611) | |
| 286-407, gnl|oryCun1|scaffold_203277 (160066-159885) | |
| 286-407, gnl|panTro1|chr12 (72931137-72931320) | |
| 286-407, gnl|rheMac2|chr13 (70782214-70782397) | |
| 286-407, gnl|rn3|chr4 (120669451-120669275) | |
| 286-407, gnl|tetNig1|chr11 (5188575-5188716) | |
| 286-407, gnl|xenTro1|scaffold_110 (1582478-1582302) | |
| 408-557, gnl|bosTau2|chr14 (18338587-18338438) | |
| 408-557, gnl|canFam2|chr10 (72073361-72073546) | |
| 408-557, gnl|danRer3|chr24 (16358279-16358453) | |
| 408-557, gnl|dasNov1|scaffold_14082 (22139-21910) | |
| 408-557, gnl|fr1|chrUn (216541161-216541353) | |
| 408-557, gnl|galGal2|chrUn (89537421-89537602) | |
| 408-557, gnl|hg17|chr2 (70595107-70595336) | |
| 408-557, gnl|Hg17|chr2 (70595275-70595126) | |
| 408-557, gnl|loxAfr1|scaffold_4093 (53237-53005) | |
| 408-557, gnl|mm7|chr6 (86345186-86344966) | |
| 408-557, gnl|Mm7|chr6 (86345016-86345165) | |
| 408-557, gnl|monDom2|scaffold_1 (94170918-94171134) | |
| 408-557, gnl|oryCun1|scaffold_174465 (7777-8002) | |
| 408-557, gnl|panTro1|chr12 (72921875-72922104) | |
| 408-557, gnl|rheMac2|chr13 (70773061-70773290) | |
| 408-557, gnl|rn3|chr4 (120676770-120676551) | |
| 408-557, gnl|tetNig1|chr11 (5188330-5188534) | |
| 408-557, gnl|xenTro1|scaffold_110 (1583469-1583292) | |
| 665-1029, gnl|bosTau2|chr14 (18335054-18334688) | |
| 665-1029, gnl|Hg17|chr2 (70589656-70589301) | |
| 665-1029, gnl|Mm7|chr6 (86347031-86347375) | |
| 1055-1332, gnl|bosTau2|chr14 (18334682-18334399) | |
| 1055-1332, gnl|dasNov1|scaffold_14082 (27582-27050) | |
| 1055-1332, gnl|echTel1|scaffold_232844 (4899-4373) | |
| 1055-1332, gnl|hg17|chr2 (70588789-70589347) | |
| 1055-1332, gnl|Hg17|chr2 (70589274-70589001) | |
| 1055-1332, gnl|loxAfr1|scaffold_4093 (58188-57642) | |
| 1055-1332, gnl|mm7|chr6 (86347761-86347339) | |
| 1055-1332, gnl|monDom2|scaffold_1 (94162784-94163465) | |
| 1055-1332, gnl|oryCun1|scaffold_174465 (3054-3579) | |
| 1055-1332, gnl|panTro1|chr12 (72914206-72914764) | |
| 1055-1332, gnl|rheMac2|chr13 (70766756-70767314) | |
| 1055-1332, gnl|rn3|chr4 (120679346-120678943) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cbl (0.229595) |